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Provide testing support for Python 3.12 – drop support for {3.8, 3.9} (…
…#751) * update precommit * update CI env * update workflows * Python 312 support - drop 38/39 * update test for Python 312 pass (minor rounding) * update CI versions/syntax * proper dev install of shapely * martin suggestion - geos * matplotlib for esda * matplotlib for esda * stable -> latest * bash evaluator * bash evaluator [2] * not no-optional experssion * not no-optional expression [2] * not no-optional expression [3] * remove section from README
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
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@@ -17,32 +17,24 @@ | |
| required: false | ||
|
|
||
| jobs: | ||
| linting: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: actions/setup-python@v4 | ||
| - uses: pre-commit/[email protected] | ||
|
|
||
| testing: | ||
| needs: linting | ||
| name: ${{ matrix.os }}, ${{ matrix.environment-file }} | ||
| runs-on: ${{ matrix.os }} | ||
| timeout-minutes: 30 | ||
| strategy: | ||
| matrix: | ||
| os: [ubuntu-latest] | ||
| environment-file: | ||
| - ci/38-BASE.yaml | ||
| - ci/39-BASE.yaml | ||
| - ci/310-BASE.yaml | ||
| - ci/311-BARE.yaml | ||
| - ci/311-BASE.yaml | ||
| - ci/311-DEV.yaml | ||
| - ci/310-oldest.yaml | ||
| - ci/310-no-optional.yaml | ||
| - ci/310-latest.yaml | ||
| - ci/311-latest.yaml | ||
| - ci/312-latest.yaml | ||
| - ci/312-dev.yaml | ||
| include: | ||
| - environment-file: ci/311-BASE.yaml | ||
| - environment-file: ci/312-latest.yaml | ||
| os: macos-latest | ||
| - environment-file: ci/311-BASE.yaml | ||
| - environment-file: ci/312-latest.yaml | ||
| os: windows-latest | ||
| fail-fast: false | ||
|
|
||
|
|
@@ -53,19 +45,14 @@ | |
| steps: | ||
| - name: checkout repo | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 # Fetch all history for all branches and tags. | ||
|
|
||
| - name: setup micromamba | ||
| uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| environment-file: ${{ matrix.environment-file }} | ||
| micromamba-version: 'latest' | ||
| channel-priority: 'flexible' | ||
|
|
||
| - name: install bleeding edge libpysal & esda (Ubuntu / Python 3.11) | ||
| run: | | ||
| pip install git+https://github.com/pysal/libpysal.git@main | ||
| pip install git+https://github.com/pysal/esda.git@main | ||
| if: matrix.os == 'ubuntu-latest' && contains(matrix.environment-file, 'DEV') | ||
|
|
||
| - name: environment info | ||
| run: | | ||
|
|
@@ -74,11 +61,22 @@ | |
| - name: spatial versions (if geopandas is installed) | ||
| run: 'python -c "import geopandas; geopandas.show_versions();"' | ||
| if: contains(matrix.environment-file, 'DEV') || contains(matrix.environment-file, 'BASE') | ||
| if: contains(matrix.environment-file, 'no-optional') != true | ||
|
|
||
| - name: run tests | ||
| run: | | ||
| pytest spaghetti -v -r a -n auto --cov spaghetti --doctest-modules --cov-report xml --color yes --cov-append --cov-report term-missing --timeout 60 | ||
| pytest \ | ||
| spaghetti \ | ||
| -v \ | ||
| -r a \ | ||
| -n auto \ | ||
| --color yes \ | ||
| --cov spaghetti \ | ||
| --cov-append \ | ||
| --cov-report term-missing \ | ||
| --cov-report xml \ | ||
| --doctest-modules \ | ||
| --timeout 60 | ||
| - name: codecov | ||
| uses: codecov/codecov-action@v3 | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,22 @@ | ||
| name: test | ||
| channels: | ||
| - conda-forge | ||
| dependencies: | ||
| - python=3.10 | ||
| # required | ||
| - esda=2.1 | ||
| - libpysal=4.6 | ||
| - numpy=1.22 | ||
| - pandas=1.4 | ||
| - pip | ||
| - rtree=1.0 | ||
| - scipy=1.8 | ||
| # testing | ||
| - codecov | ||
| - pytest | ||
| - pytest-cov | ||
| - pytest-timeout | ||
| - pytest-xdist | ||
| # optional | ||
| - geopandas=0.12 | ||
| - shapely=2.0 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| name: test | ||
| channels: | ||
| - conda-forge | ||
| dependencies: | ||
| - python=3.12 | ||
| # required | ||
| - geos # for shapely | ||
| - matplotlib # for esda | ||
| - numpy | ||
| - pip | ||
| - rtree | ||
| - watermark | ||
| # testing | ||
| - codecov | ||
| - pytest | ||
| - pytest-cov | ||
| - pytest-timeout | ||
| - pytest-xdist | ||
| - pip: | ||
| # dev versions of packages | ||
| - --pre --index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --extra-index-url https://pypi.org/simple | ||
| - pandas | ||
| - scipy | ||
| - git+https://github.com/pysal/esda.git@main | ||
| - git+https://github.com/geopandas/geopandas.git@main | ||
| - git+https://github.com/pysal/libpysal.git@main | ||
| - git+https://github.com/shapely/shapely.git@main |
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