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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 493 240

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 76 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 4 1 Updated Feb 19, 2025
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 1 3 3 Updated Feb 18, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 1 BSD-3-Clause 5 5 2 Updated Feb 18, 2025
  • q2-fmt Public

    q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!

    qiime2/q2-fmt’s past year of commit activity
    Python 4 BSD-3-Clause 11 7 2 Updated Feb 18, 2025
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 0 0 0 0 Updated Feb 17, 2025
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 0 1 0 Updated Feb 17, 2025
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 1 Updated Feb 17, 2025
  • discourse-unhandled-tagger Public Forked from discourse/discourse-unhandled-tagger

    Simple plugin that tags topics automatically if non-staff replies

    qiime2/discourse-unhandled-tagger’s past year of commit activity
    Ruby 0 MIT 8 0 0 Updated Feb 14, 2025
  • resources Public

    Source for QIIME 2 Resources page.

    qiime2/resources’s past year of commit activity
    TeX 1 BSD-3-Clause 4 1 0 Updated Feb 13, 2025
  • qiime2/static-site-infrastructure’s past year of commit activity
    Dockerfile 0 BSD-3-Clause 3 3 0 Updated Feb 13, 2025