FIX: define dev dependencies as dependency groups (#65)

* MAINT: update lock files
* FIX: remove `pre-commit-uv` and `tox` from environment
* FIX: remove `notebooks` dependency group
* FIX: remove thebe and launch buttons

.github/workflows/ci.yml

@@ -28,7 +28,7 @@ on:
 
 jobs:
   doc:
-    uses: ComPWA/actions/.github/workflows/ci-docs.yml@v2
+    uses: ComPWA/actions/.github/workflows/ci-docs.yml@v2.1
     permissions:
       pages: write
       id-token: write
@@ -38,4 +38,4 @@ jobs:
     if: inputs.specific-pip-packages == ''
     secrets:
       token: ${{ secrets.PAT }}
-    uses: ComPWA/actions/.github/workflows/pre-commit.yml@v2
+    uses: ComPWA/actions/.github/workflows/pre-commit.yml@v2.1

.pre-commit-config.yaml

@@ -12,7 +12,7 @@ repos:
       - id: check-useless-excludes
 
   - repo: https://github.com/ComPWA/policy
-    rev: 0.5.0
+    rev: 0.5.6
     hooks:
       - id: check-dev-files
         args:
@@ -24,7 +24,7 @@ repos:
           - --repo-title=BOSS Documentation
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.7.0
+    rev: v0.7.1
     hooks:
       - id: ruff
         args: [--fix]
@@ -84,11 +84,11 @@ repos:
           )$
 
   - repo: https://github.com/ComPWA/pyright-pre-commit
-    rev: v1.1.385
+    rev: v1.1.386
     hooks:
       - id: pyright
 
   - repo: https://github.com/astral-sh/uv-pre-commit
-    rev: 0.4.24
+    rev: 0.4.28
     hooks:
       - id: uv-lock

.readthedocs.yml

@@ -11,7 +11,11 @@ build:
       pixi global install uv
     - |-
       export UV_LINK_MODE=copy
-      uv run --extra doc --locked --with tox \
+      uv run \
+        --group doc \
+        --locked \
+        --no-dev \
+        --with tox \
         tox -e doc
       mkdir -p $READTHEDOCS_OUTPUT
       mv docs/_build/html $READTHEDOCS_OUTPUT

docs/conf.py

@@ -1,6 +1,5 @@
 from __future__ import annotations
 
-from sphinx_api_relink.helpers import get_execution_mode
 from sphinx_api_relink.linkcode import (
     _get_commit_sha,  # pyright:ignore[reportPrivateUsage]
 )
@@ -25,7 +24,7 @@
 copyright = "2020, BESIII"
 default_role = "py:obj"
 extensions = [
-    "myst_nb",
+    "myst_parser",
     "sphinx.ext.autosectionlabel",
     "sphinx.ext.intersphinx",
     "sphinx.ext.mathjax",
@@ -35,7 +34,6 @@
     "sphinx_copybutton",
     "sphinx_design",
     "sphinx_pybtex_etal_style",
-    "sphinx_thebe",
     "sphinx_togglebutton",
     "sphinxcontrib.bibtex",
 ]
@@ -51,13 +49,6 @@
 html_sourcelink_suffix = ""
 html_theme = "sphinx_book_theme"
 html_theme_options = {
-    "launch_buttons": {
-        "binderhub_url": "https://mybinder.org",
-        "colab_url": "https://colab.research.google.com",
-        "notebook_interface": "jupyterlab",
-        "thebe": True,
-        "thebelab": True,
-    },
     "path_to_docs": "docs",
     "repository_url": f"https://github.com/redeboer/{REPO_NAME}",
     "repository_branch": BRANCH,
@@ -97,18 +88,11 @@
     "smartquotes",
 ]
 myst_update_mathjax = False
-nb_execution_mode = get_execution_mode()
-nb_execution_timeout = -1
-nb_output_stderr = "remove"
 nitpicky = True  # warn if cross-references are missing
 panels_add_bootstrap_css = False  # remove panels css to get wider main content
 primary_domain = "py"
 project = "BESIII Offline Software System"
 pygments_style = "sphinx"
-thebe_config = {
-    "repository_url": html_theme_options["repository_url"],
-    "repository_branch": html_theme_options["repository_branch"],
-}
 todo_include_todos = True
 suppress_warnings = [
     "myst.domains",

pyproject.toml

@@ -20,48 +20,36 @@ license = {text = "GPLv3 or later"}
 name = "bossdoc"
 requires-python = ">=3.12"
 
-[project.optional-dependencies]
+[project.readme]
+content-type = "text/markdown"
+file = "README.md"
+
+[project.urls]
+Changelog = "https://github.com/redeboer/bossdoc/releases"
+Documentation = "http://bes3.rtfd.io"
+Source = "https://github.com/redeboer/bossdoc"
+Tracker = "https://github.com/redeboer/bossdoc/issues"
+
+[dependency-groups]
 dev = [
-    "bossdoc[doc]",
-    "bossdoc[sty]",
-    "jupyterlab",
-    "jupyterlab-code-formatter",
+    "ruff",
     "sphinx-autobuild",
-    "tox >=1.9",
+    {include-group = "doc"},
+    {include-group = "style"},
 ]
 doc = [
-    "Sphinx >=3",
-    "ipywidgets",
-    "matplotlib",
-    "myst-nb",
+    "myst-parser",
+    "sphinx",
     "sphinx-api-relink",
     "sphinx-book-theme",
     "sphinx-comments",
     "sphinx-copybutton",
     "sphinx-design",
     "sphinx-pybtex-etal-style",
-    "sphinx-thebe",
     "sphinx-togglebutton",
     "sphinxcontrib-bibtex >=2",
 ]
-sty = [
-    "bossdoc[types]",
-    "pre-commit-uv",
-    "ruff",
-]
-types = [
-    "sphinx-api-relink",
-]
-
-[project.readme]
-content-type = "text/markdown"
-file = "README.md"
-
-[project.urls]
-Changelog = "https://github.com/redeboer/bossdoc/releases"
-Documentation = "http://bes3.rtfd.io"
-Source = "https://github.com/redeboer/bossdoc"
-Tracker = "https://github.com/redeboer/bossdoc/issues"
+style = ["sphinx-api-relink"]
 
 [tool.setuptools]
 include-package-data = false