dave2020cell

Dave et al 2020 Single CA1 Pyramidal cell model

Usage

To run this model, first compile the ion channel and synapse mechanisms.

1. Open a bash terminal (from within the NEURON Application)
2. cd into the model code folder
3. Type the command to compile the mechanisms:

• On Mac and Linux: nrnivmodl
• On Windows: mknrndll

Stand-alone NEURON program

To launch the program from stand-alone NEURON software, in a bash terminal, enter: nrngui mosinit66.hoc

Once the NEURON program launches, it will open several windows and control dialogs.

1. Find the small window with buttons for SINGLE, DOUBLE, and ALPHA. Click one of the buttons to select the synapse model type
2. Find the RunControl panel and push Init & Run to run the simulation and see results on the graph.
3. In the upper left corner of the graph window, click the square to show a menu and then select View > View = Plot to zoom into the plotted results

NEURON+Python in Spyder

Coming soon!