Merge pull request #172 from MKLau/dev

v 1.1.3

.Rbuildignore

@@ -1,11 +1,13 @@
 ^codecov\.yml$
 CONTRIBUTE.md
+CONTRIBUTING.md
 cran-comments.md
 .travis.yml
 cleanR-demo.gif
 cleanR_demo_vid.png
-^exec/loader.R
-^example
 ^joss
 ^ropensci
 ^CODE_OF_CONDUCT\.md$
+README.Rmd
+README.rmd
+README.html

.gitignore

@@ -31,4 +31,4 @@ vignettes/*.pdf
 # Temporary files created by R markdown
 *.utf8.md
 *.knit.md
-
+README.html

.travis.yml

@@ -17,7 +17,7 @@ r_packages:
 #   - graph
 
 r_github_packages:
-  - ProvTools/provR
+#  - ProvTools/provR
 #  - duncantl/CodeDepends
 
 after_success:

CONTRIBUTING.md

@@ -15,7 +15,7 @@ Just using the package and giving feedback is contributing. If
 the package is not working as described, congratulations you've
 discovered a bug! If you think this is the case, please submit an
 issue to the github
-[issue](https://github.com/ProvTools/Rclean/issues) system. 
+[issue](https://github.com/MKLau/Rclean/issues) system. 
 
 Include a reproducible example in the issue or a link to a
 [gist](https://gist.github.com/), with the following:

DESCRIPTION

@@ -1,23 +1,23 @@
 Type: Package
 Package: Rclean
 Title: A Tool for Writing Cleaner, More Transparent Code
-Version: 1.1.0
+Version: 1.1.3
 Authors@R: person("Matthew", "Lau", email = "[email protected]", role = c("aut", "cre"))
 Description: To create clearer, more concise code provides this
 	     toolbox helps coders to isolate the essential parts of a
 	     script that produces a chosen result, such as an object,
-	     tables and figures written to disk and even warnings and
-	     errors.
-URL: https://github.com/ProvTools/Rclean
-BugReports: https://github.com/ProvTools/Rclean/issues
+	     tables and figures written to disk.
+URL: https://github.com/MKLau/Rclean
+BugReports: https://github.com/MKLau/Rclean/issues
 License: GPL-3 | file LICENSE
 Depends:
    R (>= 3.5.0)
-Imports: igraph, jsonlite, formatR, CodeDepends, methods, Rgraphviz
+Imports: igraph, jsonlite, CodeDepends, methods, Rgraphviz, clipr, styler
 biocViews: Rgraphviz, graph
 Suggests: roxygen2, testthat, covr, knitr
 Remotes: MKLau/CodeDepends
 Language: en-US
 Encoding: UTF-8
 RoxygenNote: 6.1.1
 VignetteBuilder: knitr
+LazyData: true

NAMESPACE

@@ -1,26 +1,22 @@
 # Generated by roxygen2: do not edit by hand
 
 export(clean)
-export(codeGraph)
-export(get.libs)
-export(get.spine)
-export(p.spine)
-export(parse.graph)
-export(parse.info)
-export(read.prov)
-export(var.lineage)
-export(write.code)
+export(code_graph)
+export(get_libs)
+export(get_vars)
+export(keep)
 importFrom(CodeDepends,getDetailedTimelines)
 importFrom(CodeDepends,getInputs)
+importFrom(CodeDepends,getVariables)
 importFrom(CodeDepends,readScript)
 importFrom(Rgraphviz,plot)
-importFrom(formatR,tidy_source)
+importFrom(clipr,write_clip)
+importFrom(grDevices,dev.off)
+importFrom(grDevices,pdf)
 importFrom(igraph,dfs)
 importFrom(igraph,graph_from_adjacency_matrix)
 importFrom(igraph,igraph.to.graphNEL)
-importFrom(jsonlite,fromJSON)
 importFrom(methods,slot)
 importFrom(stats,na.omit)
-importFrom(utils,capture.output)
+importFrom(styler,style_text)
 importFrom(utils,sessionInfo)
-importFrom(utils,tail)