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gfa paths #103

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gfa paths #103

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Commits on Feb 5, 2017

  1. Add posibility to colors node in cli image generation

    @natir
    natir committed Feb 5, 2017
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Commits on Mar 10, 2017

  1. Fix crash when adding new BLAST queries but not immediately running s… 

    …earch
    @rrwick
    rrwick committed Mar 10, 2017
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Commits on Mar 17, 2017

  1. Refuse to load GFA/FASTG with duplicate node names

    @rrwick
    rrwick committed Mar 17, 2017
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  2. Remove unnecessary lines in project file

    @rrwick
    rrwick committed Mar 17, 2017
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Commits on Mar 18, 2017

  1. Merge pull request rrwick#35 from natir/master 

    Add posibility to colors node in cli image generation
    @rrwick
    rrwick authored Mar 18, 2017
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Commits on Apr 7, 2017

  1. Add select nodes with dead ends

    @rrwick
    rrwick committed Apr 7, 2017
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  2. Merge branch 'development' of https://github.com/rrwick/Bandage into … 

    …development
    @rrwick
    rrwick committed Apr 7, 2017
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Commits on May 8, 2017

  1. Allow FASTQ files for BLAST search

    @rrwick
    rrwick committed May 8, 2017
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Commits on May 26, 2017

  1. Small fix for CSV parsing

    @rrwick
    rrwick committed May 26, 2017
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Commits on Jul 13, 2017

  1. Fix Bandage info tab-delimited output

    @rrwick
    rrwick committed Jul 13, 2017
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Commits on Oct 17, 2017

  1. Added dotplot.cpp and dotplot.h to calculate k-mer seed hits. Also, u… 

    …pdated the .pro file to compile the new sources.
    @isovic
    isovic committed Oct 17, 2017
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  2. Added the placeholder for the dotplot, and removed the vertical space… 

    …rs to make the GUI more compact.
    @isovic
    isovic committed Oct 17, 2017
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  3. Added a shared pointer to hold the dotplot scene, and the method whic… 

    …h will be signalled by the slot.
    @isovic
    isovic committed Oct 17, 2017
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  4. Added the signal handling and plotting of the dotplot between two sel… 

    …ected nodes. If more (or less) than two nodes are selected, Bandage will notify the user and won't draw.
    @isovic
    isovic committed Oct 17, 2017
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Commits on Oct 18, 2017

  1. Added declarations to dotplot.h.

    @isovic
    isovic committed Oct 18, 2017
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  2. Allowed self-dotplots.

    @isovic
    isovic committed Oct 18, 2017
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Commits on Oct 19, 2017

  1. Added unit tests for the new methods.

    @isovic
    isovic committed Oct 19, 2017
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  2. Fixed the dotplot.cpp and dotplot.h according to the results discover… 

    …ed by unit tests.
    @isovic
    isovic committed Oct 19, 2017
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  3. Changed the upper limit to k-mer size as checked by the Main window.

    @isovic
    isovic committed Oct 19, 2017
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  4. Minor aesthetic changes.

    @isovic
    isovic committed Oct 19, 2017
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Commits on Oct 20, 2017

  1. Merge pull request rrwick#52 from isovic/dotplot 

    Dotplot
    @rrwick
    rrwick authored Oct 20, 2017
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  2. Adjust UI layout of dotplot

    @rrwick
    rrwick committed Oct 20, 2017
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  3. Tweaks to dotplot

    @rrwick
    rrwick committed Oct 20, 2017
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  4. Use a spinbox for k-mer size input

    @rrwick
    rrwick committed Oct 20, 2017
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Commits on Oct 24, 2017

  1. Fix issues with tab order

    @rrwick
    rrwick committed Oct 24, 2017
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Commits on Oct 31, 2017

  1. Added a failing test case for the dotplot.

    @isovic
    isovic committed Oct 31, 2017
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  2. Fixed the bug in findHits (dotplot). Previously, only the first hit w… 

    …ould be reported.
    @isovic
    isovic committed Oct 31, 2017
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Commits on Nov 1, 2017

  1. Merge pull request rrwick#54 from isovic/dotplot 

    Dotplot
    @rrwick
    rrwick authored Nov 1, 2017
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Commits on May 2, 2018

  1. Parse and store GFA paths

    @asl
    asl committed May 2, 2018
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  2. Show loaded GFA paths

    @asl
    asl committed May 2, 2018
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  3. Allow path selection via GUI

    @asl
    asl committed May 2, 2018
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  4. Allow select nodes along GFA path

    @asl
    asl committed May 2, 2018
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  5. Implement recoloring

    @asl
    asl committed May 2, 2018
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  6. Properly recolor paths in double-stranded mode

    @asl
    asl committed May 2, 2018
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Commits on Jun 15, 2021

  1. Merge branch 'development' of https://github.com/rrwick/Bandage into … 

    …dev-gfa-merge
    @ekg
    ekg committed Jun 15, 2021
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  2. correct merge

    @ekg
    ekg committed Jun 15, 2021
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