set default fit(verbose=2) in knitr context
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| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| schedule: | |
| - cron: '51 3 * * Fri' | |
| name: R-CMD-check | |
| defaults: | |
| run: | |
| shell: Rscript {0} | |
| jobs: | |
| R-CMD-check: | |
| name: ${{ matrix.os }}, tf-${{ matrix.tf }}, R-${{ matrix.r }} | |
| timeout-minutes: 30 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {os: 'ubuntu-latest' , tf: 'default', r: 'release'} | |
| - {os: 'windows-latest', tf: 'default', r: 'release'} | |
| - {os: 'macOS-latest' , tf: 'default', r: 'release'} | |
| - {os: 'ubuntu-latest' , tf: 'default', r: 'oldrel'} | |
| - {os: 'windows-latest', tf: 'default', r: 'oldrel'} | |
| - {os: 'macOS-latest' , tf: 'default', r: 'oldrel'} | |
| - {os: 'ubuntu-latest', tf: 'default', r: 'oldrel-1'} | |
| - {os: 'ubuntu-latest', tf: 'default', r: '3.6'} # default R in ubuntu-20.04 | |
| - {os: 'ubuntu-20.04' , tf: 'release', r: 'release'} | |
| - {os: 'windows-latest', tf: 'release', r: 'release'} | |
| - {os: 'macOS-latest' , tf: 'release', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.13', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.12', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.11', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.10', r: 'release'} | |
| - {os: 'ubuntu-latest', tf: '2.8', r: 'release'} | |
| # these are allowed to fail | |
| # - {os: 'ubuntu-20.04', tf: 'default', r: 'devel'} | |
| # - {os: 'ubuntu-20.04', tf: '2.7.0rc1', r: 'release'} | |
| # - {os: 'ubuntu-20.04', tf: 'nightly' , r: 'release'} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ matrix.tf == 'nightly' || contains(matrix.tf, 'rc') || matrix.r == 'devel' }} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: 'true' | |
| # R_COMPILE_AND_INSTALL_PACKAGES: 'never' # commented out until CRAN builds TF 2.8 | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setup-r | |
| with: | |
| r-version: ${{ matrix.r }} | |
| Ncpus: '2L' | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Get Date | |
| id: get-date | |
| shell: bash | |
| run: | | |
| echo "year-week=$(date -u "+%Y-%U")" >> $GITHUB_OUTPUT | |
| echo "date=$(date -u "+%F")" >> $GITHUB_OUTPUT | |
| # echo "::set-output name=year-week::$(date -u "+%Y-%U")" | |
| # echo "::set-output name=date::$(date -u "+%F")" | |
| - name: Restore R package cache | |
| uses: actions/cache@v2 | |
| id: r-package-cache | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ matrix.os }}-${{ steps.setup-r.outputs.installed-r-version }}-${{ steps.get-date.outputs.year-week }}-4 | |
| # - name: Install remotes | |
| # if: steps.r-package-cache.outputs.cache-hit != 'true' | |
| # run: install.packages("remotes") | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: rcmdcheck remotes local::. | |
| cache-version: 4 | |
| upgrade: 'TRUE' | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| shell: bash | |
| run: | | |
| . /etc/os-release | |
| while read -r cmd | |
| do | |
| echo "$cmd" | |
| sudo $cmd | |
| done < <(Rscript -e "writeLines(remotes::system_requirements('$ID-$VERSION_ID'))") | |
| # - name: Install Package + deps | |
| # run: remotes::install_local(dependencies = TRUE, force = TRUE) | |
| # | |
| # - name: Install Miniconda | |
| # run: reticulate::install_miniconda() | |
| - name: Install Tensorflow + Keras deps | |
| run: keras::install_keras(tensorflow = '${{ matrix.tf }}-cpu') | |
| # - name: Install rcmdcheck | |
| # run: remotes::install_cran("rcmdcheck") | |
| - name: Check | |
| run: rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'warning', check_dir = 'check') | |
| - name: Show testthat output | |
| if: always() | |
| shell: bash | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| - name: Don't use tar from old Rtools to store the cache | |
| if: ${{ runner.os == 'Windows' && startsWith(steps.install-r.outputs.installed-r-version, '3') }} | |
| shell: bash | |
| run: echo "C:/Program Files/Git/usr/bin" >> $GITHUB_PATH |