v0.3.3

warning for non-G12/H12 blanks
stricter validation of collection info for malaise trap samples
limit lat/lon to 6 digits
templates update
partners list update
bold parser update
sts manifests concatenation notebook
bioscan manifest fixing notebook
minor fixes

validation 0.3.2

This release is identical to 0.3.1 except version bump is now applied to the logging

validation 0.3.1

• prototype parse bold manifests for BIOSCAN
• wing auto changed to other somatic tissue
• email address column name variation auto-handling
• double check blank wells expectation for G12, mark as not sequenced
• rename test manifest to reflect date update
• remove all data in ORGANISM_PART=NOT_APPLICABLE
• catch lot vs collection date - same date for same lot, not the other way around
• duration of collection warning for not hours only (PT\dH)
• do not allow dashes in plate IDs
• update bioscan partner codes list
• filename check allow for any additions after version
• blanks across plates & samples across plates - separate counting of plate only
• warn if extra column names are not in allcaps with underscores
• fix sorting solution double error from SHAP_2401
• clean up reporting for trailing spaces and extra info in blanks

validation 0.3.0

0.3.0

• add bioscan manifest v3 support and set it as template, v2 input still supported
• amend STS output to match v3 manifest, allowing for both v2 and v3 manifests conversion into the same STS output
• regex validations for all format-sensitive fields including dates, reimplement date comparison
• date cleanup from time addition by Excel-to-pandas conversion
• validate identifier against contributors
• validate input filename
• continued error message clarifications
• logic updates, bug fixes, general refactoring
• tested on backlog pre-release

validation 0.2.0

bioscan v2, anospp v4

• added new logic for better adherence to SOPs - non-breaking spaces removal, catch lot validation, what three words validation, gal inference from plate ID prefix
• initial work on error message text standartisation
• introduce DEBUG messages to separate state reports from summary stats
• plate expansion after validation to preserve refs to SERIES
• logic updates, bug fixes, general refactoring

bioscan v2, anospp v4

Major code update:

• code generalisation - most functions are applicable for both BIOSCAN and ANOSPP projects (validate_partner_manifest_dev.ipynb), project-specific notebooks only specify validation functions and parameters
• bumped BIOSCAN manifest version from v1 to v2.0, introduce ANOSPP at manifest v4.0. Add manifest SOPs as points of reference for validation
• extended testing of validation functions by inclusion of test datasets with errors into template manifests
• added contributors tab validation
• added generation of xlsx for STS, embedded validation version in the filename
• added and modified checks logic, improved reporting, generic refactoring

bioscan v1

Final version of bioscan v1 validation - further commits incorporate ANOSPP validation and work towards bioscan v2.0 and anospp v4.0