Update usage.md

Update test yaml

docs/usage.md

@@ -59,20 +59,27 @@ Example is based on [test.yaml](../assets/test.yaml).
 dataset:
   id: baUndUnlc1
   illumina_10X:
-    reads: /lustre/scratch123/tol/resources/nextflow/test-data/Undibacterium_unclassified/genomic_data/baUndUnlc1/10x/
+    reads:
+      - https://tolit.cog.sanger.ac.uk/test-data/Undibacterium_unclassified/genomic_data/baUndUnlc1/10x/baUndUnlc1_S12_L002_R1_001.fastq.gz
+      - https://tolit.cog.sanger.ac.uk/test-data/Undibacterium_unclassified/genomic_data/baUndUnlc1/10x/baUndUnlc1_S12_L002_R2_001.fastq.gz
+      - https://tolit.cog.sanger.ac.uk/test-data/Undibacterium_unclassified/genomic_data/baUndUnlc1/10x/baUndUnlc1_S12_L002_I1_001.fastq.gz
   pacbio:
     reads:
-      - reads: /lustre/scratch123/tol/resources/nextflow/test-data/Undibacterium_unclassified/genomic_data/baUndUnlc1/pacbio/fasta/HiFi.reads.fasta
+      - reads: https://tolit.cog.sanger.ac.uk/test-data/Undibacterium_unclassified/genomic_data/baUndUnlc1/pacbio/fasta/HiFi.reads.fasta
   HiC:
     reads:
-      - reads: /lustre/scratch123/tol/resources/nextflow/test-data/Undibacterium_unclassified/genomic_data/baUndUnlc1/hic-arima2/41741_2#7.sub.cram
+      - reads: https://tolit.cog.sanger.ac.uk/test-data/Undibacterium_unclassified/genomic_data/baUndUnlc1/hic-arima2/41741_2%237.sub.cram
 hic_motif: GATC,GANTC,CTNAG,TTAA
+hic_aligner: bwamem2
 busco:
   lineage: bacteria_odb10
 mito:
   species: Caradrina clavipalpis
   min_length: 15000
   code: 5
+  fam: https://github.com/c-zhou/OatkDB/raw/main/v20230921/insecta_mito.fam
+plastid:
+  fam: https://github.com/c-zhou/OatkDB/raw/main/v20230921/acrogymnospermae_pltd.fam
 ```
 </details>