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Convert pipelines's internal links inside Git document pages to direct Github links #60

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merged 1 commit into from
Sep 29, 2023
Merged

Convert pipelines's internal links inside Git document pages to direct Github links #60

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18 changes: 12 additions & 6 deletions includes/functions.php
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Original file line number Diff line number Diff line change
Expand Up @@ -282,14 +282,20 @@ function return_json($response) {
exit();
}

function get_self_url($strip_query = true) {
// Build URL for this page
function get_url_protocol() {
if (((isset($_SERVER['HTTPS']) && $_SERVER['HTTPS'] === 'on'))
|| $_SERVER['HTTP_HOST'] === 'pipelines.tol.sanger.ac.uk'){
$self_url = 'https://';
} else {
$self_url = 'http://';
|| endsWith($_SERVER['HTTP_HOST'], 'tol.sanger.ac.uk') ){
$protocol = 'https://';
}else{
$protocol = 'http://';
}
return $protocol;
}

function get_self_url($strip_query = true) {
// Build URL for this page
$self_url = get_url_protocol();

if ($strip_query) {
$url = strtok($_SERVER['REQUEST_URI'], '?');
} else {
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4 changes: 2 additions & 2 deletions includes/pipeline_page/_index.php
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Expand Up @@ -194,7 +194,7 @@
}
# Some other URL pattern that we don't recognise - 404
elseif ($_GET['path'] != $pipeline->name && $_GET['path'] != $pipeline->name . '/' . $release) {
$protocol = isset($_SERVER['HTTPS']) && !empty($_SERVER['HTTPS']) ? 'https://' : 'http://';
$protocol = get_url_protocol();
$url_string = trim(str_replace($pipeline->name, '', $_GET['path']), '/');
$url_string = trim(str_replace($release, '', $url_string), '/');
header('HTTP/1.1 404 Not Found');
Expand Down Expand Up @@ -287,7 +287,7 @@

<div class="container-xxl main-content">

<ul class="nav nav-fill nfcore-subnav justify-content-start justify-content-md-around d-print-none">
<ul class="nav nav-fill nfcore-subnav justify-content-start justify-content-md-around d-print-none">
<li class="nav-item dropdown d-block d-lg-none" style="z-index:10000;">
<button class="btn btn-secondary dropdown-toggle" type="button" data-bs-toggle="dropdown" aria-expanded="false">
<?php echo $subpage_names[$pagetab]; ?>
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13 changes: 9 additions & 4 deletions includes/pipeline_page/docs_md.php
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Expand Up @@ -39,15 +39,20 @@
}

# Configs to make relative URLs work
$href_url_prepend = '/' . $pipeline->name . '/' . $release . '/' . dirname($filename) . '/';
$href_url_prepend = '/' . $release . '/' . dirname($filename) . '/';
$href_url_prepend = preg_replace('/\/\/+/', '/', $href_url_prepend);
$src_url_prepend = 'https://raw.githubusercontent.com/nf-core' . $href_url_prepend;
$href_url_prepend = 'https://github.com/' . $pipeline->full_name . '/blob/' . $href_url_prepend;

$src_url_prepend = '/' . $pipeline->name . '/' . $release . '/' . dirname($filename) . '/';
$src_url_prepend= preg_replace('/\/\/+/', '/', $src_url_prepend);
$src_url_prepend = 'https://raw.githubusercontent.com/sanger-tol' . $src_url_prepend;

$href_url_suffix_cleanup = '\.md';

# Markdown cleanup
$md_content_replace[] = ['/# nf-core\/' . $pipeline->name . ': /', '# '];
$md_content_replace[] = ['/# sanger-tol\/' . $pipeline->name . ': /', '# '];
$md_content_replace[] = [
'/# !\[nf-core\/' . $pipeline->name . '\]\(images\/nf-core-' . $pipeline->name . '_logo.png\)/',
'/# !\[sanger-tol\/' . $pipeline->name . '\]\(images\/sanger-tol-' . $pipeline->name . '_logo.png\)/',
'',
];
$md_content_replace[] = ['/(## :warning:)(.*?)( files\._)/s', ''];
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