Merge pull request #832 from sanger/x1262-section-thikness

section thickness to a precision of 0.5
sanger · Dec 5, 2024 · d2b57e2 · d2b57e2
2 parents d47732d + 10efd05
commit d2b57e2
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Showing 6 changed files with 2,664 additions and 2,664 deletions.
diff --git a/src/components/planning/LabwarePlan.tsx b/src/components/planning/LabwarePlan.tsx
@@ -381,7 +381,7 @@ function buildValidationSchema(labwareType: LabwareType): Yup.AnyObjectSchema {
       .matches(/^\d{7}$/, 'Xenium barcode should be a 7-digit number');
   }
   if (labwareType.name !== LabwareTypeName.FETAL_WASTE_CONTAINER) {
-    formShape.sectionThickness = Yup.number().required().integer().min(1);
+    formShape.sectionThickness = Yup.number().required().min(0.5);
   }
   if (
     labwareType.name === LabwareTypeName.VISIUM_LP ||

diff --git a/src/components/planning/labwarePlan.machine.ts b/src/components/planning/labwarePlan.machine.ts
@@ -260,7 +260,7 @@ function buildPlanRequestLabware({
       const sources = layoutPlan.plannedActions.get(address)!;
       return sources.map((source) => ({
         address,
-        sampleThickness,
+        sampleThickness: sampleThickness?.toString(),
         sampleId: source.sampleId,
         source: {
           barcode: source.labware.barcode,

diff --git a/src/pages/SectionRegistration.tsx b/src/pages/SectionRegistration.tsx
@@ -89,7 +89,7 @@ function buildSectionRegisterRequest(values: SectionRegistrationFormValues): Sec
             medium: labware.medium.trim(),
             replicateNumber: sample.replicateNumber,
             sectionNumber: sample.sectionNumber,
-            sectionThickness: sample.sectionThickness,
+            sectionThickness: sample.sectionThickness.toString(),
             spatialLocation: sample.spatialLocation,
             species: sample.species.trim(),
             tissueType: sample.tissueType.trim(),

diff --git a/src/pages/registration/SectionForm.tsx b/src/pages/registration/SectionForm.tsx
@@ -229,6 +229,7 @@ export default function SectionForm({
         label="Section Thickness"
         type="number"
         name={`labwares.${currentIndex}.slots.${slotAddress}.${sectionIndex}.sectionThickness`}
+        step="0.5"
       />
 
       <div className="flex flex-row justify-between">

diff --git a/src/pages/sectioning/Plan.tsx b/src/pages/sectioning/Plan.tsx
@@ -50,7 +50,7 @@ function Plan() {
 
   const [numLabware, setNumLabware] = React.useState<number>(1);
 
-  const [sectionThickness, setSectionThickness] = React.useState<number>(1);
+  const [sectionThickness, setSectionThickness] = React.useState<number>(0.5);
 
   const sectioningInfo = useLoaderData() as GetSectioningInfoQuery;
   /**
@@ -127,7 +127,8 @@ function Plan() {
           onChange={(e) => setSectionThickness(Number(e.currentTarget.value))}
           value={sectionThickness}
           data-testid={'sectionThickness'}
-          min={1}
+          min={0.5}
+          step={0.5}
         />
       </div>
     );