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v0.13.0
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@normanrz normanrz released this 21 Jun 07:56
· 227 commits to master since this release
v0.13.0
80bfb2e

webknossos

Added

  • Added duration_in_seconds and modified to AnnotationInfo. #914
  • Added zarrita storage backend for arrays. zarrita supports Zarr v2 and v3 including sharding. To activate zarrita, the environment variable WK_USE_ZARRITA must be set. #912
  • Added a Zarr3 data format which supports sharding. #912

Changed

  • Integrated the wkcuber CLI tool into webknossos package. #903
    • To get an overview of all webknossos subcommands type webknossos --help. If the usage of a single subcommand is of interest type webknossos <subcommand> --help
    • These commands were changed:
      • python -m wkcuber, python -m wkcuber.convert_image_stack_to_wkw -> webknossos convert
      • python -m wkcuber.export_wkw_as_tiff -> webknossos export-wkw-as-tiff
      • python -m wkcuber.convert_knossos -> webknossos convert-knossos
      • python -m wkcuber.convert_nifti -> webknossos convert-nifti
      • python -m wkcuber.convert_raw -> webknossos convert-raw
      • python -m wkcuber.downsampling -> webknossos downsample
      • python -m wkcuber.compress -> webknossos compress
      • python -m wkcuber.check_equality -> webknossos check-equality
    • There is one new command:
      • webknossos upload to upload a dataset to a WEBKNOSSOS server
    • These commands have been removed:
      • python -m wkcuber.cubing
      • python -m wkcuber.tile_cubing
      • python -m wkcuber.metadata
      • python -m wkcuber.recubing

Fixed

  • Fixed a bug where upsampling of a layer would fail, if the layer had a bounding box that doesn't align with the from_mag mag. #915

wkcuber

The wkcuber package is now deprecated because the CLI was integrated into the webknossos package. Please use the CLI in the webknossos package instead.

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