[FIX] sam/bam with new extension modes

seqan · Aug 19, 2016 · 770c963 · 770c963
1 parent 51facff
commit 770c963
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/src/lambda.hpp b/src/lambda.hpp
@@ -2038,6 +2038,9 @@ iterateMatchesFullSimd(TLocalHolder & lH)
         appendValue(depSetV, source(bm.alignRow1));
 
         _setFrames(bm, *it, lH);
+
+        bm._n_qId = it->qryId / qNumFrames(TGlobalHolder::blastProgram);
+        bm._n_sId = it->subjId / sNumFrames(TGlobalHolder::blastProgram);
     }
 
     // fill up last batch
@@ -2219,6 +2222,9 @@ iterateMatchesFullSerial(TLocalHolder & lH)
         }
 
         _setFrames(bm, m, lH);
+
+        bm._n_qId = it->qryId / qNumFrames(TGlobalHolder::blastProgram);
+        bm._n_sId = it->subjId / sNumFrames(TGlobalHolder::blastProgram);
     }
 
     _writeRecord(record, lH);