Release 0.9.0 [2015/09/14]

new features

• ported to SeqAn 2.0 bringing in lots of smaller changes (#1)
• support for column reordering and more columns in tabular output (#2)
• gzipped and bzipped input and output files supported (#19)
• some checks are performed on input data to detect wrong alphabets (#21)

compatibility

• previously generated indexes are unfortunately not compatible with 0.9.*

changes in command line interface

• hide most options by default (visible again with --full-help)

bug-fixes and minor changes

• error in man-page (#5)
• erroneously report "unexpected extension failure" (#9)
• crash in TBlastX mode (#10)
• parameter for number of matches not working (#13)
• crash when putative duplicates heuristic is turned off (#22)
• many small improvements to BlastIO