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Pre-release 1.9.0 [2016/08/18]

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@h-2 h-2 released this 18 Aug 13:17

major changes

  • variable length seeding and new seeding strategy, much faster (#17)
  • new FM index with EPR dictionaries (faster, but bigger) (#57)
  • early support for SIMD operations in extension phase (only faster for small reads) (#58)
  • new database/index format, files now moved to sub-directory, better diagnostics (#7)

compatibility

  • support for .seg files and masking was removed, it yielded poor results and is superseded by variable length seeding (#47)
  • the new index format is incompatible to previous releases and it now uses the -i parameter (#7)
  • both, the command line options and the index-format are subject to change during the 1.9.* cycle!