Pre-release 1.9.2 [2017/01/10]

• everything from 1.0.1

features

• SIMD parallelization for short query sequences, e.g. Illumina; not yet default (#58)
• species annotation of subject sequences, see Taxonomic Workflows (#63)
• compile time option that enables larger protein databases sequences (#70)
• bi-directional indexes supported; not yet default (#74)
• taxonomic binning, see Taxonomic Workflows (#77)

bug-fixes and minor changes

• crash when encountering input sequences that are shorter than a seed (#66)

compatibility

• the on-disk index format has changed and is not compatible to any previous version
• some of the optional --sam-bam-tags were renamed, see the wiki (#79)
• requires seqan-2.3.1