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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 388 43

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 243 36

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 138 24

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 135 48

  5. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

  6. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 88 26

Repositories

Showing 10 of 180 repositories
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 6 BSD-3-Clause 0 10 0 Updated Dec 24, 2024
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 22 Apache-2.0 312 91 36 Updated Dec 20, 2024
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    seung-lab/connected-components-3d’s past year of commit activity
    C++ 388 LGPL-3.0 43 10 4 Updated Dec 20, 2024
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 135 BSD-3-Clause 48 77 5 Updated Dec 19, 2024
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 45 GPL-3.0 17 21 4 Updated Dec 18, 2024
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    seung-lab/fastremap’s past year of commit activity
    C++ 48 LGPL-3.0 6 0 0 Updated Dec 9, 2024
  • DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    seung-lab/DracoPy’s past year of commit activity
    C++ 88 Apache-2.0 26 11 2 Updated Dec 5, 2024
  • zebrafish Public template Forked from sylhare/Type-on-Strap

    Zebrafish Hindbrain Connectome

    seung-lab/zebrafish’s past year of commit activity
    Liquid 1 MIT 913 0 1 Updated Dec 5, 2024
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    seung-lab/cloud-files’s past year of commit activity
    Python 39 BSD-3-Clause 8 14 0 Updated Dec 4, 2024
  • seuron Public Forked from wongwill86/air-tasks

    SEUnglab neuRON pipeline

    seung-lab/seuron’s past year of commit activity
    Python 6 MIT 6 1 0 Updated Nov 30, 2024
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