SMC proteogenomics project

Pipeline objective

Characterize the predicted proteins at sQTL loci that are linked to CAD risks

Predict full-length protein isoforms from the filtered PacBio transcript isoform annotation.
Visualize SMC-specific isoforms that are linked to Coronary Artery Disease (CAD) on UCSC genome browser track.

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
01_isoseq		01_isoseq
02_demux		02_demux
03_sqanti		03_sqanti
04_cpat		04_cpat
05_reference_table		05_reference_table
06_transcriptome_summary		06_transcriptome_summary
07_orf_calling		07_orf_calling
08_refine_orf_database		08_refine_orf_database
09_make_pacbio_cds_gtf		09_make_pacbio_cds_gtf
10_visualization_track		10_visualization_track
SMC_filter_file_validation		SMC_filter_file_validation
SMC_filtered_track		SMC_filtered_track
.gitignore		.gitignore
README.md		README.md
sqtl_to_bed.py		sqtl_to_bed.py
transcript_count.ipynb		transcript_count.ipynb