v1.1.2

Release for Zenodo

Full Changelog: v1.1.1...v1.1.2

v1.1.1

What's Changed

• Seaborn heatmap "cluster by" controls weren't correctly showing by @haessar in #68

Full Changelog: v1.1.0...v1.1.1

v1.1.0

What's Changed

• Feature alt img formats by @haessar in #67
  • All paraCell-specific plots can now be rendered and saved as either PNG (with 150, 300 or 600 DPI), SVG or PDF. This includes the following tabs:
    • Cell Population View
    • Trajectory Inference
    • TradeSeq
    • Host-Parasite Interactions
  • To change image format, go to "Global Setting" tab and change the "Figure format" and "Figure DPI" dropdown values. Remember to replot anything you want to save after making this change.

Full Changelog: v1.0.0...v1.1.0

v1.0.0

What's Changed

• updated versions of libgcc-ng and libstdcxx-ng by @EdwardAgboraw in #61
• added paraCell Dockerfile by @EdwardAgboraw in #62
• moved slingshot helper scripts to the "slingshot_example" folder, add… by @EdwardAgboraw in #63
• Origin/UI changes by @EdwardAgboraw in #65
• Minor corrections to the DEG tab by @EdwardAgboraw in #64

Full Changelog: v0.1.1...v1.0.0

v0.1.1

What's Changed

• set Rscript path explicitly using R_HOME env var by @haessar in #60

Full Changelog: v0.1.0...v0.1.1

v0.1.0

What's Changed

• Feature scatter plot by @EdwardAgboraw in #6
• Interactive feature scatter by @haessar in #9
• Better buttons by @EdwardAgboraw in #11
• rebuilt geneset-to-database functionality by @EdwardAgboraw in #12
• Detect organism by @EdwardAgboraw in #14
• hardcoded YAML file location by @EdwardAgboraw in #15
• Pseudotime by @EdwardAgboraw in #16
• minor fix to detectOrganism (interface.html) by @EdwardAgboraw in #17
• minor fix to DEG tables by @EdwardAgboraw in #18
• Automated YAML file parsing by @EdwardAgboraw in #20
• Pseudotime fix by @EdwardAgboraw in #21
• DataSource by @EdwardAgboraw in #23
• nested addDescription within parseYAML by @EdwardAgboraw in #24
• generalized the CellPopList function by @EdwardAgboraw in #25
• Pseudotime by @EdwardAgboraw in #26
• TradeSeq by @EdwardAgboraw in #27
• changed order of tabs presented by VIP by @EdwardAgboraw in #28
• Gene name search by @EdwardAgboraw in #29
• Cluster markers by @EdwardAgboraw in #19
• HP by @EdwardAgboraw in #31
• Paracell 2 by @EdwardAgboraw in #32
• YAML files no longer stored in git repo by @EdwardAgboraw in #33
• HP_cluster_markers by @EdwardAgboraw in #34
• "within VIP" -> "within paraCell" in relevant tabs by @EdwardAgboraw in #35
• HP .uns slot change by @EdwardAgboraw in #36
• HP_cluster_markers_2 by @EdwardAgboraw in #37
• added HP example folder, fixed flaws in HP code by @EdwardAgboraw in #38
• Advanced gene search 2 by @EdwardAgboraw in #39
• Advanced Gene Search 3 by @EdwardAgboraw in #40
• Advanced gene search 4 by @EdwardAgboraw in #41
• Advanced gene search 5 by @EdwardAgboraw in #42
• added R dependency YAML file by @EdwardAgboraw in #43
• New Readme by @EdwardAgboraw in #45
• Host parasite cc figure by @EdwardAgboraw in #46
• Haessar/master by @EdwardAgboraw in #47
• Merge upstreams / updated cellxgene version by @haessar in #44
• Hp Umap 2 by @EdwardAgboraw in #48
• Help Tab by @EdwardAgboraw in #49
• parseYAML -> setup_paraCell by @EdwardAgboraw in #50
• Yaml to uns 2 by @EdwardAgboraw in #51
• Yaml to uns by @EdwardAgboraw in #52
• Para cell setup layout by @EdwardAgboraw in #53
• Select database by @EdwardAgboraw in #54
• Ags update by @EdwardAgboraw in #55
• added save button to tradeSeq table by @EdwardAgboraw in #56
• Hp setup by @EdwardAgboraw in #57
• added Slingshot helper scripts by @EdwardAgboraw in #58

New Contributors

• @haessar made their first contribution in #9

Full Changelog: https://github.com/sii-cell-atlas/paraCell/commits/v0.1.0