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Fix documentation due to missing python modules #91

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merged 3 commits into from
Sep 4, 2024
Merged

Fix documentation due to missing python modules #91

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679842e
Import sacc
xgarrido Sep 4, 2024
bcf6e8f
Fix import
xgarrido Sep 4, 2024
dda66d5
fix broken table
xgarrido Sep 4, 2024
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1 change: 1 addition & 0 deletions docs/requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -2,3 +2,4 @@ sphinx-book-theme
sphinx-copybutton
myst-nb
cobaya
sacc
2 changes: 1 addition & 1 deletion docs/source/mflike.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
``MFLike`` class content
------------------------

.. autoclass:: mflike.MFLike
.. autoclass:: mflike.mflike._MFLike
:exclude-members: initialize
:members:
:private-members:
Expand Down
185 changes: 175 additions & 10 deletions docs/source/notebooks/tutorial_fisher.ipynb
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Expand Up @@ -438,16 +438,181 @@
},
"outputs": [
{
"ename": "ModuleNotFoundError",
"evalue": "No module named 'latex2mathml'",
"output_type": "error",
"traceback": [
"\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[1;31mModuleNotFoundError\u001b[0m Traceback (most recent call last)",
"Cell \u001b[1;32mIn[14], line 8\u001b[0m\n\u001b[0;32m 1\u001b[0m \u001b[38;5;66;03m# LaTeX expressions do not render properly with pydata-sphinx-theme.\u001b[39;00m\n\u001b[0;32m 2\u001b[0m \u001b[38;5;66;03m# It's long standing issue https://github.com/executablebooks/jupyter-book/issues/1826\u001b[39;00m\n\u001b[0;32m 3\u001b[0m \u001b[38;5;66;03m# with no real solution except hacky's one. Here we convert LaTeX name of parameters to MathML\u001b[39;00m\n\u001b[0;32m 4\u001b[0m \u001b[38;5;66;03m# equivalent and display the pandas dataframe with the styler class of pandas to render HTML code\u001b[39;00m\n\u001b[0;32m 5\u001b[0m \u001b[38;5;66;03m# You need to pip install latex2mathml or change index to latex_names variable\u001b[39;00m\n\u001b[0;32m 6\u001b[0m \u001b[38;5;66;03m# if you do not plan to generate documentation.\u001b[39;00m\n\u001b[0;32m 7\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mpandas\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m \u001b[38;5;21;01mpd\u001b[39;00m\n\u001b[1;32m----> 8\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mlatex2mathml\u001b[39;00m\u001b[38;5;21;01m.\u001b[39;00m\u001b[38;5;21;01mconverter\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m convert\n\u001b[0;32m 10\u001b[0m (\n\u001b[0;32m 11\u001b[0m pd\u001b[38;5;241m.\u001b[39mDataFrame(\n\u001b[0;32m 12\u001b[0m [\n\u001b[1;32m (...)\u001b[0m\n\u001b[0;32m 20\u001b[0m \u001b[38;5;241m.\u001b[39mstyle\u001b[38;5;241m.\u001b[39mformat(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;132;01m{:e}\u001b[39;00m\u001b[38;5;124m\"\u001b[39m, subset\u001b[38;5;241m=\u001b[39m[\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mvalue\u001b[39m\u001b[38;5;124m\"\u001b[39m, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mσ\u001b[39m\u001b[38;5;124m\"\u001b[39m])\n\u001b[0;32m 21\u001b[0m )\n",
"\u001b[1;31mModuleNotFoundError\u001b[0m: No module named 'latex2mathml'"
]
}
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},
"execution_count": 112,
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"source": [
"# LaTeX expressions do not render properly with pydata-sphinx-theme.\n",
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4 changes: 2 additions & 2 deletions mflike/mflike.py
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The theory :math:`C_{\ell}` are then summed with the (possibly frequency
integrated) foreground power spectra from the ``BandpowerForeground`` class,
and modified by systematic effects and calibrations.
The underlying foreground spectra are computed through ``fgspectra``.
and modified by systematic effects and calibrations.
The underlying foreground spectra are computed through ``fgspectra``.


This class applies three kinds of systematic effects to the CMB + foreground power spectrum:
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