deploy: dff581d

sky1ove · Oct 31, 2024 · 8087dcc · 8087dcc
commit 8087dcc
Show file tree

Hide file tree

Showing 423 changed files with 100,004 additions and 0 deletions.
diff --git a/.nojekyll b/.nojekyll
diff --git a/01b_Combine_Datasets_files/figure-commonmark/cell-19-output-1.png b/01b_Combine_Datasets_files/figure-commonmark/cell-19-output-1.png
diff --git a/01b_Combine_Datasets_files/figure-html/cell-19-output-1.png b/01b_Combine_Datasets_files/figure-html/cell-19-output-1.png
diff --git a/02_Specificity_files/figure-commonmark/cell-27-output-1.png b/02_Specificity_files/figure-commonmark/cell-27-output-1.png
diff --git a/02_Specificity_files/figure-commonmark/cell-28-output-2.png b/02_Specificity_files/figure-commonmark/cell-28-output-2.png
diff --git a/02_Specificity_files/figure-commonmark/cell-31-output-1.png b/02_Specificity_files/figure-commonmark/cell-31-output-1.png
diff --git a/02_Specificity_files/figure-commonmark/cell-32-output-2.png b/02_Specificity_files/figure-commonmark/cell-32-output-2.png
diff --git a/02_Specificity_files/figure-commonmark/cell-37-output-1.png b/02_Specificity_files/figure-commonmark/cell-37-output-1.png
diff --git a/02_Specificity_files/figure-html/cell-27-output-1.png b/02_Specificity_files/figure-html/cell-27-output-1.png
diff --git a/02_Specificity_files/figure-html/cell-28-output-2.png b/02_Specificity_files/figure-html/cell-28-output-2.png
diff --git a/02_Specificity_files/figure-html/cell-31-output-1.png b/02_Specificity_files/figure-html/cell-31-output-1.png
diff --git a/02_Specificity_files/figure-html/cell-32-output-2.png b/02_Specificity_files/figure-html/cell-32-output-2.png
diff --git a/02_Specificity_files/figure-html/cell-37-output-1.png b/02_Specificity_files/figure-html/cell-37-output-1.png
diff --git a/03a_Compare_PSP_LS_files/figure-commonmark/cell-13-output-1.png b/03a_Compare_PSP_LS_files/figure-commonmark/cell-13-output-1.png
diff --git a/03a_Compare_PSP_LS_files/figure-commonmark/cell-14-output-1.png b/03a_Compare_PSP_LS_files/figure-commonmark/cell-14-output-1.png
diff --git a/03a_Compare_PSP_LS_files/figure-commonmark/cell-15-output-1.png b/03a_Compare_PSP_LS_files/figure-commonmark/cell-15-output-1.png
diff --git a/03a_Compare_PSP_LS_files/figure-commonmark/cell-15-output-2.png b/03a_Compare_PSP_LS_files/figure-commonmark/cell-15-output-2.png
diff --git a/03a_Compare_PSP_LS_files/figure-commonmark/cell-16-output-1.png b/03a_Compare_PSP_LS_files/figure-commonmark/cell-16-output-1.png
diff --git a/03a_Compare_PSP_LS_files/figure-commonmark/cell-16-output-2.png b/03a_Compare_PSP_LS_files/figure-commonmark/cell-16-output-2.png
diff --git a/03a_Compare_PSP_LS_files/figure-html/cell-13-output-1.png b/03a_Compare_PSP_LS_files/figure-html/cell-13-output-1.png
diff --git a/03a_Compare_PSP_LS_files/figure-html/cell-14-output-1.png b/03a_Compare_PSP_LS_files/figure-html/cell-14-output-1.png
diff --git a/03a_Compare_PSP_LS_files/figure-html/cell-15-output-1.png b/03a_Compare_PSP_LS_files/figure-html/cell-15-output-1.png
diff --git a/03a_Compare_PSP_LS_files/figure-html/cell-15-output-2.png b/03a_Compare_PSP_LS_files/figure-html/cell-15-output-2.png
diff --git a/03a_Compare_PSP_LS_files/figure-html/cell-16-output-1.png b/03a_Compare_PSP_LS_files/figure-html/cell-16-output-1.png
diff --git a/03a_Compare_PSP_LS_files/figure-html/cell-16-output-2.png b/03a_Compare_PSP_LS_files/figure-html/cell-16-output-2.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-13-output-2.png b/03b_Correlation_ST_files/figure-commonmark/cell-13-output-2.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-13-output-3.png b/03b_Correlation_ST_files/figure-commonmark/cell-13-output-3.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-13-output-4.png b/03b_Correlation_ST_files/figure-commonmark/cell-13-output-4.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-25-output-1.png b/03b_Correlation_ST_files/figure-commonmark/cell-25-output-1.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-27-output-2.png b/03b_Correlation_ST_files/figure-commonmark/cell-27-output-2.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-28-output-2.png b/03b_Correlation_ST_files/figure-commonmark/cell-28-output-2.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-29-output-1.png b/03b_Correlation_ST_files/figure-commonmark/cell-29-output-1.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-30-output-1.png b/03b_Correlation_ST_files/figure-commonmark/cell-30-output-1.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-30-output-2.png b/03b_Correlation_ST_files/figure-commonmark/cell-30-output-2.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-35-output-2.png b/03b_Correlation_ST_files/figure-commonmark/cell-35-output-2.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-37-output-1.png b/03b_Correlation_ST_files/figure-commonmark/cell-37-output-1.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-38-output-1.png b/03b_Correlation_ST_files/figure-commonmark/cell-38-output-1.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-40-output-1.png b/03b_Correlation_ST_files/figure-commonmark/cell-40-output-1.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-40-output-2.png b/03b_Correlation_ST_files/figure-commonmark/cell-40-output-2.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-40-output-3.png b/03b_Correlation_ST_files/figure-commonmark/cell-40-output-3.png
diff --git a/03b_Correlation_ST_files/figure-commonmark/cell-46-output-1.png b/03b_Correlation_ST_files/figure-commonmark/cell-46-output-1.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-13-output-2.png b/03b_Correlation_ST_files/figure-html/cell-13-output-2.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-13-output-3.png b/03b_Correlation_ST_files/figure-html/cell-13-output-3.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-13-output-4.png b/03b_Correlation_ST_files/figure-html/cell-13-output-4.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-25-output-1.png b/03b_Correlation_ST_files/figure-html/cell-25-output-1.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-27-output-2.png b/03b_Correlation_ST_files/figure-html/cell-27-output-2.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-28-output-2.png b/03b_Correlation_ST_files/figure-html/cell-28-output-2.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-29-output-1.png b/03b_Correlation_ST_files/figure-html/cell-29-output-1.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-30-output-1.png b/03b_Correlation_ST_files/figure-html/cell-30-output-1.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-30-output-2.png b/03b_Correlation_ST_files/figure-html/cell-30-output-2.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-35-output-2.png b/03b_Correlation_ST_files/figure-html/cell-35-output-2.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-37-output-1.png b/03b_Correlation_ST_files/figure-html/cell-37-output-1.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-38-output-1.png b/03b_Correlation_ST_files/figure-html/cell-38-output-1.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-40-output-1.png b/03b_Correlation_ST_files/figure-html/cell-40-output-1.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-40-output-2.png b/03b_Correlation_ST_files/figure-html/cell-40-output-2.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-40-output-3.png b/03b_Correlation_ST_files/figure-html/cell-40-output-3.png
diff --git a/03b_Correlation_ST_files/figure-html/cell-46-output-1.png b/03b_Correlation_ST_files/figure-html/cell-46-output-1.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-16-output-1.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-16-output-1.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-24-output-2.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-24-output-2.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-24-output-3.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-24-output-3.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-24-output-4.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-24-output-4.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-1.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-1.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-2.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-2.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-3.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-3.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-4.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-4.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-5.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-5.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-6.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-6.png
diff --git a/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-7.png b/03c_Correlation_Tyr_files/figure-commonmark/cell-33-output-7.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-16-output-1.png b/03c_Correlation_Tyr_files/figure-html/cell-16-output-1.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-24-output-2.png b/03c_Correlation_Tyr_files/figure-html/cell-24-output-2.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-24-output-3.png b/03c_Correlation_Tyr_files/figure-html/cell-24-output-3.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-24-output-4.png b/03c_Correlation_Tyr_files/figure-html/cell-24-output-4.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-33-output-1.png b/03c_Correlation_Tyr_files/figure-html/cell-33-output-1.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-33-output-2.png b/03c_Correlation_Tyr_files/figure-html/cell-33-output-2.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-33-output-3.png b/03c_Correlation_Tyr_files/figure-html/cell-33-output-3.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-33-output-4.png b/03c_Correlation_Tyr_files/figure-html/cell-33-output-4.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-33-output-5.png b/03c_Correlation_Tyr_files/figure-html/cell-33-output-5.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-33-output-6.png b/03c_Correlation_Tyr_files/figure-html/cell-33-output-6.png
diff --git a/03c_Correlation_Tyr_files/figure-html/cell-33-output-7.png b/03c_Correlation_Tyr_files/figure-html/cell-33-output-7.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-13-output-1.png b/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-13-output-1.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-14-output-2.png b/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-14-output-2.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-14-output-3.png b/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-14-output-3.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-14-output-4.png b/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-14-output-4.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-29-output-2.png b/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-29-output-2.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-29-output-3.png b/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-29-output-3.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-29-output-4.png b/04a_Plot_heatmap_logo_CDDM_files/figure-commonmark/cell-29-output-4.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-13-output-1.png b/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-13-output-1.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-14-output-2.png b/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-14-output-2.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-14-output-3.png b/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-14-output-3.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-14-output-4.png b/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-14-output-4.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-29-output-2.png b/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-29-output-2.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-29-output-3.png b/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-29-output-3.png
diff --git a/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-29-output-4.png b/04a_Plot_heatmap_logo_CDDM_files/figure-html/cell-29-output-4.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-14-output-1.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-14-output-1.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-15-output-1.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-15-output-1.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-10.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-10.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-12.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-12.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-2.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-4.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-4.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-6.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-6.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-8.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-16-output-8.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-17-output-12.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-17-output-12.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-17-output-3.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-17-output-3.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-17-output-6.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-17-output-6.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-17-output-9.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-17-output-9.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-28-output-2.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-28-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-31-output-2.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-31-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-36-output-2.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-36-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-37-output-2.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-37-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-commonmark/cell-8-output-1.png b/05_Hierarchical_clustering_files/figure-commonmark/cell-8-output-1.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-14-output-1.png b/05_Hierarchical_clustering_files/figure-html/cell-14-output-1.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-15-output-1.png b/05_Hierarchical_clustering_files/figure-html/cell-15-output-1.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-16-output-10.png b/05_Hierarchical_clustering_files/figure-html/cell-16-output-10.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-16-output-12.png b/05_Hierarchical_clustering_files/figure-html/cell-16-output-12.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-16-output-2.png b/05_Hierarchical_clustering_files/figure-html/cell-16-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-16-output-4.png b/05_Hierarchical_clustering_files/figure-html/cell-16-output-4.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-16-output-6.png b/05_Hierarchical_clustering_files/figure-html/cell-16-output-6.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-16-output-8.png b/05_Hierarchical_clustering_files/figure-html/cell-16-output-8.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-17-output-12.png b/05_Hierarchical_clustering_files/figure-html/cell-17-output-12.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-17-output-3.png b/05_Hierarchical_clustering_files/figure-html/cell-17-output-3.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-17-output-6.png b/05_Hierarchical_clustering_files/figure-html/cell-17-output-6.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-17-output-9.png b/05_Hierarchical_clustering_files/figure-html/cell-17-output-9.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-28-output-2.png b/05_Hierarchical_clustering_files/figure-html/cell-28-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-31-output-2.png b/05_Hierarchical_clustering_files/figure-html/cell-31-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-36-output-2.png b/05_Hierarchical_clustering_files/figure-html/cell-36-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-37-output-2.png b/05_Hierarchical_clustering_files/figure-html/cell-37-output-2.png
diff --git a/05_Hierarchical_clustering_files/figure-html/cell-8-output-1.png b/05_Hierarchical_clustering_files/figure-html/cell-8-output-1.png
diff --git a/06_AA_feature_files/figure-commonmark/cell-13-output-1.png b/06_AA_feature_files/figure-commonmark/cell-13-output-1.png
diff --git a/06_AA_feature_files/figure-commonmark/cell-14-output-1.png b/06_AA_feature_files/figure-commonmark/cell-14-output-1.png
diff --git a/06_AA_feature_files/figure-commonmark/cell-20-output-1.png b/06_AA_feature_files/figure-commonmark/cell-20-output-1.png
diff --git a/06_AA_feature_files/figure-commonmark/cell-22-output-1.png b/06_AA_feature_files/figure-commonmark/cell-22-output-1.png
diff --git a/06_AA_feature_files/figure-commonmark/cell-23-output-1.png b/06_AA_feature_files/figure-commonmark/cell-23-output-1.png
diff --git a/06_AA_feature_files/figure-commonmark/cell-24-output-1.png b/06_AA_feature_files/figure-commonmark/cell-24-output-1.png
diff --git a/06_AA_feature_files/figure-commonmark/cell-25-output-1.png b/06_AA_feature_files/figure-commonmark/cell-25-output-1.png
diff --git a/06_AA_feature_files/figure-html/cell-13-output-1.png b/06_AA_feature_files/figure-html/cell-13-output-1.png
diff --git a/06_AA_feature_files/figure-html/cell-14-output-1.png b/06_AA_feature_files/figure-html/cell-14-output-1.png
diff --git a/06_AA_feature_files/figure-html/cell-20-output-1.png b/06_AA_feature_files/figure-html/cell-20-output-1.png
diff --git a/06_AA_feature_files/figure-html/cell-22-output-1.png b/06_AA_feature_files/figure-html/cell-22-output-1.png
diff --git a/06_AA_feature_files/figure-html/cell-23-output-1.png b/06_AA_feature_files/figure-html/cell-23-output-1.png
diff --git a/06_AA_feature_files/figure-html/cell-24-output-1.png b/06_AA_feature_files/figure-html/cell-24-output-1.png
diff --git a/06_AA_feature_files/figure-html/cell-25-output-1.png b/06_AA_feature_files/figure-html/cell-25-output-1.png
diff --git a/07b_Plot_distribution_files/figure-commonmark/cell-10-output-1.png b/07b_Plot_distribution_files/figure-commonmark/cell-10-output-1.png
diff --git a/07b_Plot_distribution_files/figure-commonmark/cell-12-output-1.png b/07b_Plot_distribution_files/figure-commonmark/cell-12-output-1.png
diff --git a/07b_Plot_distribution_files/figure-commonmark/cell-14-output-1.png b/07b_Plot_distribution_files/figure-commonmark/cell-14-output-1.png
diff --git a/07b_Plot_distribution_files/figure-commonmark/cell-16-output-1.png b/07b_Plot_distribution_files/figure-commonmark/cell-16-output-1.png
diff --git a/07b_Plot_distribution_files/figure-commonmark/cell-19-output-1.png b/07b_Plot_distribution_files/figure-commonmark/cell-19-output-1.png
diff --git a/07b_Plot_distribution_files/figure-commonmark/cell-21-output-1.png b/07b_Plot_distribution_files/figure-commonmark/cell-21-output-1.png
diff --git a/07b_Plot_distribution_files/figure-commonmark/cell-22-output-1.png b/07b_Plot_distribution_files/figure-commonmark/cell-22-output-1.png
diff --git a/07b_Plot_distribution_files/figure-commonmark/cell-23-output-1.png b/07b_Plot_distribution_files/figure-commonmark/cell-23-output-1.png
diff --git a/07b_Plot_distribution_files/figure-html/cell-10-output-1.png b/07b_Plot_distribution_files/figure-html/cell-10-output-1.png
diff --git a/07b_Plot_distribution_files/figure-html/cell-12-output-1.png b/07b_Plot_distribution_files/figure-html/cell-12-output-1.png
diff --git a/07b_Plot_distribution_files/figure-html/cell-14-output-1.png b/07b_Plot_distribution_files/figure-html/cell-14-output-1.png
diff --git a/07b_Plot_distribution_files/figure-html/cell-16-output-1.png b/07b_Plot_distribution_files/figure-html/cell-16-output-1.png
diff --git a/07b_Plot_distribution_files/figure-html/cell-19-output-1.png b/07b_Plot_distribution_files/figure-html/cell-19-output-1.png
diff --git a/07b_Plot_distribution_files/figure-html/cell-21-output-1.png b/07b_Plot_distribution_files/figure-html/cell-21-output-1.png
diff --git a/07b_Plot_distribution_files/figure-html/cell-22-output-1.png b/07b_Plot_distribution_files/figure-html/cell-22-output-1.png
diff --git a/07b_Plot_distribution_files/figure-html/cell-23-output-1.png b/07b_Plot_distribution_files/figure-html/cell-23-output-1.png
diff --git a/07c_Enrichment_ATM_files/figure-commonmark/cell-17-output-1.png b/07c_Enrichment_ATM_files/figure-commonmark/cell-17-output-1.png
diff --git a/07c_Enrichment_ATM_files/figure-html/cell-17-output-1.png b/07c_Enrichment_ATM_files/figure-html/cell-17-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-32-output-1.png b/08_AUCDF_files/figure-commonmark/cell-32-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-32-output-2.png b/08_AUCDF_files/figure-commonmark/cell-32-output-2.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-41-output-1.png b/08_AUCDF_files/figure-commonmark/cell-41-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-42-output-1.png b/08_AUCDF_files/figure-commonmark/cell-42-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-43-output-1.png b/08_AUCDF_files/figure-commonmark/cell-43-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-44-output-1.png b/08_AUCDF_files/figure-commonmark/cell-44-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-45-output-1.png b/08_AUCDF_files/figure-commonmark/cell-45-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-46-output-1.png b/08_AUCDF_files/figure-commonmark/cell-46-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-47-output-1.png b/08_AUCDF_files/figure-commonmark/cell-47-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-48-output-1.png b/08_AUCDF_files/figure-commonmark/cell-48-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-49-output-1.png b/08_AUCDF_files/figure-commonmark/cell-49-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-50-output-1.png b/08_AUCDF_files/figure-commonmark/cell-50-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-51-output-1.png b/08_AUCDF_files/figure-commonmark/cell-51-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-52-output-1.png b/08_AUCDF_files/figure-commonmark/cell-52-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-57-output-1.png b/08_AUCDF_files/figure-commonmark/cell-57-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-57-output-2.png b/08_AUCDF_files/figure-commonmark/cell-57-output-2.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-58-output-1.png b/08_AUCDF_files/figure-commonmark/cell-58-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-58-output-2.png b/08_AUCDF_files/figure-commonmark/cell-58-output-2.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-70-output-1.png b/08_AUCDF_files/figure-commonmark/cell-70-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-71-output-1.png b/08_AUCDF_files/figure-commonmark/cell-71-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-73-output-1.png b/08_AUCDF_files/figure-commonmark/cell-73-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-76-output-1.png b/08_AUCDF_files/figure-commonmark/cell-76-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-76-output-2.png b/08_AUCDF_files/figure-commonmark/cell-76-output-2.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-78-output-1.png b/08_AUCDF_files/figure-commonmark/cell-78-output-1.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-78-output-2.png b/08_AUCDF_files/figure-commonmark/cell-78-output-2.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-81-output-2.png b/08_AUCDF_files/figure-commonmark/cell-81-output-2.png
diff --git a/08_AUCDF_files/figure-commonmark/cell-82-output-2.png b/08_AUCDF_files/figure-commonmark/cell-82-output-2.png
diff --git a/08_AUCDF_files/figure-html/cell-32-output-1.png b/08_AUCDF_files/figure-html/cell-32-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-32-output-2.png b/08_AUCDF_files/figure-html/cell-32-output-2.png
diff --git a/08_AUCDF_files/figure-html/cell-41-output-1.png b/08_AUCDF_files/figure-html/cell-41-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-42-output-1.png b/08_AUCDF_files/figure-html/cell-42-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-43-output-1.png b/08_AUCDF_files/figure-html/cell-43-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-44-output-1.png b/08_AUCDF_files/figure-html/cell-44-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-45-output-1.png b/08_AUCDF_files/figure-html/cell-45-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-46-output-1.png b/08_AUCDF_files/figure-html/cell-46-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-47-output-1.png b/08_AUCDF_files/figure-html/cell-47-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-48-output-1.png b/08_AUCDF_files/figure-html/cell-48-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-49-output-1.png b/08_AUCDF_files/figure-html/cell-49-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-50-output-1.png b/08_AUCDF_files/figure-html/cell-50-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-51-output-1.png b/08_AUCDF_files/figure-html/cell-51-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-52-output-1.png b/08_AUCDF_files/figure-html/cell-52-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-57-output-1.png b/08_AUCDF_files/figure-html/cell-57-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-57-output-2.png b/08_AUCDF_files/figure-html/cell-57-output-2.png
diff --git a/08_AUCDF_files/figure-html/cell-58-output-1.png b/08_AUCDF_files/figure-html/cell-58-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-58-output-2.png b/08_AUCDF_files/figure-html/cell-58-output-2.png
diff --git a/08_AUCDF_files/figure-html/cell-70-output-1.png b/08_AUCDF_files/figure-html/cell-70-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-71-output-1.png b/08_AUCDF_files/figure-html/cell-71-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-73-output-1.png b/08_AUCDF_files/figure-html/cell-73-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-76-output-1.png b/08_AUCDF_files/figure-html/cell-76-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-76-output-2.png b/08_AUCDF_files/figure-html/cell-76-output-2.png
diff --git a/08_AUCDF_files/figure-html/cell-78-output-1.png b/08_AUCDF_files/figure-html/cell-78-output-1.png
diff --git a/08_AUCDF_files/figure-html/cell-78-output-2.png b/08_AUCDF_files/figure-html/cell-78-output-2.png
diff --git a/08_AUCDF_files/figure-html/cell-81-output-2.png b/08_AUCDF_files/figure-html/cell-81-output-2.png
diff --git a/08_AUCDF_files/figure-html/cell-82-output-2.png b/08_AUCDF_files/figure-html/cell-82-output-2.png
diff --git a/09a_ML_embedding_files/figure-commonmark/cell-16-output-2.png b/09a_ML_embedding_files/figure-commonmark/cell-16-output-2.png
diff --git a/09a_ML_embedding_files/figure-commonmark/cell-18-output-2.png b/09a_ML_embedding_files/figure-commonmark/cell-18-output-2.png
diff --git a/09a_ML_embedding_files/figure-commonmark/cell-19-output-2.png b/09a_ML_embedding_files/figure-commonmark/cell-19-output-2.png
diff --git a/09a_ML_embedding_files/figure-commonmark/cell-20-output-2.png b/09a_ML_embedding_files/figure-commonmark/cell-20-output-2.png
diff --git a/09a_ML_embedding_files/figure-commonmark/cell-21-output-2.png b/09a_ML_embedding_files/figure-commonmark/cell-21-output-2.png
diff --git a/09a_ML_embedding_files/figure-commonmark/cell-22-output-2.png b/09a_ML_embedding_files/figure-commonmark/cell-22-output-2.png
diff --git a/09a_ML_embedding_files/figure-commonmark/cell-23-output-2.png b/09a_ML_embedding_files/figure-commonmark/cell-23-output-2.png
diff --git a/09a_ML_embedding_files/figure-commonmark/cell-24-output-2.png b/09a_ML_embedding_files/figure-commonmark/cell-24-output-2.png
diff --git a/09a_ML_embedding_files/figure-html/cell-16-output-2.png b/09a_ML_embedding_files/figure-html/cell-16-output-2.png
diff --git a/09a_ML_embedding_files/figure-html/cell-18-output-2.png b/09a_ML_embedding_files/figure-html/cell-18-output-2.png
diff --git a/09a_ML_embedding_files/figure-html/cell-19-output-2.png b/09a_ML_embedding_files/figure-html/cell-19-output-2.png
diff --git a/09a_ML_embedding_files/figure-html/cell-20-output-2.png b/09a_ML_embedding_files/figure-html/cell-20-output-2.png
diff --git a/09a_ML_embedding_files/figure-html/cell-21-output-2.png b/09a_ML_embedding_files/figure-html/cell-21-output-2.png
diff --git a/09a_ML_embedding_files/figure-html/cell-22-output-2.png b/09a_ML_embedding_files/figure-html/cell-22-output-2.png
diff --git a/09a_ML_embedding_files/figure-html/cell-23-output-2.png b/09a_ML_embedding_files/figure-html/cell-23-output-2.png
diff --git a/09a_ML_embedding_files/figure-html/cell-24-output-2.png b/09a_ML_embedding_files/figure-html/cell-24-output-2.png
diff --git a/09b_ML_training_files/figure-commonmark/cell-13-output-1.png b/09b_ML_training_files/figure-commonmark/cell-13-output-1.png
diff --git a/09b_ML_training_files/figure-html/cell-13-output-1.png b/09b_ML_training_files/figure-html/cell-13-output-1.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-13-output-1.png b/09c_ML_analysis_files/figure-commonmark/cell-13-output-1.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-28-output-1.png b/09c_ML_analysis_files/figure-commonmark/cell-28-output-1.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-28-output-2.png b/09c_ML_analysis_files/figure-commonmark/cell-28-output-2.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-28-output-3.png b/09c_ML_analysis_files/figure-commonmark/cell-28-output-3.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-28-output-4.png b/09c_ML_analysis_files/figure-commonmark/cell-28-output-4.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-28-output-5.png b/09c_ML_analysis_files/figure-commonmark/cell-28-output-5.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-28-output-6.png b/09c_ML_analysis_files/figure-commonmark/cell-28-output-6.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-28-output-7.png b/09c_ML_analysis_files/figure-commonmark/cell-28-output-7.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-28-output-8.png b/09c_ML_analysis_files/figure-commonmark/cell-28-output-8.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-28-output-9.png b/09c_ML_analysis_files/figure-commonmark/cell-28-output-9.png
diff --git a/09c_ML_analysis_files/figure-commonmark/cell-30-output-1.png b/09c_ML_analysis_files/figure-commonmark/cell-30-output-1.png
diff --git a/09c_ML_analysis_files/figure-html/cell-13-output-1.png b/09c_ML_analysis_files/figure-html/cell-13-output-1.png
diff --git a/09c_ML_analysis_files/figure-html/cell-28-output-1.png b/09c_ML_analysis_files/figure-html/cell-28-output-1.png
diff --git a/09c_ML_analysis_files/figure-html/cell-28-output-2.png b/09c_ML_analysis_files/figure-html/cell-28-output-2.png
diff --git a/09c_ML_analysis_files/figure-html/cell-28-output-3.png b/09c_ML_analysis_files/figure-html/cell-28-output-3.png
diff --git a/09c_ML_analysis_files/figure-html/cell-28-output-4.png b/09c_ML_analysis_files/figure-html/cell-28-output-4.png
diff --git a/09c_ML_analysis_files/figure-html/cell-28-output-5.png b/09c_ML_analysis_files/figure-html/cell-28-output-5.png
diff --git a/09c_ML_analysis_files/figure-html/cell-28-output-6.png b/09c_ML_analysis_files/figure-html/cell-28-output-6.png
diff --git a/09c_ML_analysis_files/figure-html/cell-28-output-7.png b/09c_ML_analysis_files/figure-html/cell-28-output-7.png
diff --git a/09c_ML_analysis_files/figure-html/cell-28-output-8.png b/09c_ML_analysis_files/figure-html/cell-28-output-8.png
diff --git a/09c_ML_analysis_files/figure-html/cell-28-output-9.png b/09c_ML_analysis_files/figure-html/cell-28-output-9.png
diff --git a/09c_ML_analysis_files/figure-html/cell-30-output-1.png b/09c_ML_analysis_files/figure-html/cell-30-output-1.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-24-output-1.png b/09d_ML_predict_files/figure-commonmark/cell-24-output-1.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-11.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-11.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-12.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-12.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-14.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-14.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-15.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-15.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-17.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-17.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-18.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-18.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-2.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-2.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-20.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-20.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-21.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-21.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-23.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-23.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-24.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-24.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-26.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-26.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-27.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-27.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-29.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-29.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-3.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-3.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-30.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-30.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-32.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-32.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-33.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-33.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-35.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-35.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-36.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-36.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-38.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-38.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-39.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-39.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-41.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-41.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-42.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-42.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-44.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-44.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-45.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-45.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-47.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-47.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-48.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-48.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-5.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-5.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-50.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-50.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-51.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-51.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-53.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-53.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-54.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-54.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-56.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-56.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-57.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-57.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-59.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-59.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-6.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-6.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-60.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-60.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-62.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-62.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-63.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-63.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-65.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-65.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-66.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-66.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-68.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-68.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-69.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-69.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-71.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-71.png
diff --git a/09d_ML_predict_files/figure-commonmark/cell-46-output-72.png b/09d_ML_predict_files/figure-commonmark/cell-46-output-72.png