update notebooks

sky1ove · Oct 31, 2024 · f1217ac · f1217ac
1 parent f4de050
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diff --git a/README.md b/README.md
@@ -1,10 +1,15 @@
-# katlas_raw
+# KATLAS raw
 
 
 <!-- WARNING: THIS FILE WAS AUTOGENERATED! DO NOT EDIT! -->
 
-Go to nbs folder to check notebooks
+Reproduce figures for paper \[Computational Decoding of Human Kinome
+Substrate Specificities and Functions\]
 
-To run notebooks, install packages first:
+## Install
+
+To run notebooks successfully, install `dev` version of python-katlas:
 
     pip install 'python-katlas[dev]' -U
+
+## Go to `nbs` folder to run notebooks
diff --git a/katlas_raw/__init__.py b/katlas_raw/__init__.py
diff --git a/katlas_raw/_modidx.py b/katlas_raw/_modidx.py
diff --git a/nbs/01a_Preprocessing_LS.ipynb b/nbs/01a_Preprocessing_LS.ipynb
@@ -3001,9 +3001,12 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "python3",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
+  },
+  "language_info": {
+   "name": ""
   }
  },
  "nbformat": 4,

diff --git a/nbs/07a_Combine_psp_ochoa.ipynb b/nbs/07a_Combine_psp_ochoa.ipynb
@@ -1,5 +1,16 @@
 {
  "cells": [
+  {
+   "cell_type": "raw",
+   "id": "221d5f50-8f2c-4831-81fd-d900c71fb5b6",
+   "metadata": {},
+   "source": [
+    "---\n",
+    "skip_showdoc: true\n",
+    "skip_exec: true\n",
+    "---"
+   ]
+  },
   {
    "cell_type": "markdown",
    "id": "439d5d00-a82d-43a1-a5bb-a0d9940f041d",