fix(client.command.cryo_card): Catch EPICS timeout on read and retry. #626

Workflow file for this run

.github/workflows/test-or-deploy.yml at c5d50c5

	#-----------------------------------------------------------------------------
	# Title : test-or-deploy
	#-----------------------------------------------------------------------------
	# File : test-or-deploy.yml
	# Created : 2020-11-23
	#-----------------------------------------------------------------------------
	# Description:
	# Test or deploy releases of pysmurf using GitHub Actions.
	#-----------------------------------------------------------------------------
	# This file is part of the smurf software platform. It is subject to
	# the license terms in the LICENSE.txt file found in the top-level directory
	# of this distribution and at:
	# https://confluence.slac.stanford.edu/display/ppareg/LICENSE.html.
	# No part of the smurf software platform, including this file, may be
	# copied, modified, propagated, or distributed except according to the terms
	# contained in the LICENSE.txt file.
	#-----------------------------------------------------------------------------

	name: test-or-deploy
	on: [push, pull_request]

	jobs:

	# Tests

	# Run flake8 on all .py files. Should block deploys to Read The Docs.
	flake8:
	name: Flake8 Tests
	runs-on: ubuntu-20.04
	steps:
	# Checkout the code
	- name: Checkout code
	uses: actions/checkout@v2

	# Setup python3
	- name: setup python 3.8.10
	uses: actions/setup-python@v2
	with:
	python-version: 3.8.10

	# Install flake8 modules
	- name: Install dependencies
	run: \|
	python -m pip install \
	flake8-rst-docstrings \
	flake8-sfs \
	flake8-import-order

	# Run Flake 8 tests
	- name: Flake8
	run: flake8 --count python/

	# Validate the server docker image definitions
	docker-definitions:
	name: Docker Definition Tests
	runs-on: ubuntu-20.04
	steps:
	# Checkout the code.
	# We use ssh key authentication to be able to access other private
	# repositories (like the firmware repository).
	- name: Checkout code
	uses: actions/checkout@v2
	with:
	ssh-key: ${{ secrets.SLACLAB_KEY }}

	# Validate the server 'definitions.sh' file.
	# Note about tokens: In this stage we need to use the SLACLAB TOKEN
	# to be able to access the other private repositories (GITHUB_TOKEN
	# only gives access to this repository).
	- name: Validate the server definitions
	shell: bash
	env:
	SWH76_TOKEN: ${{ secrets.SWH76_TOKEN }}
	run: \|
	cd docker/server/
	./validate.sh
	cd -

	# Documentation automatic build tests
	test-docs:
	name: Documentation Build Tests
	runs-on: ubuntu-20.04
	needs: [flake8, docker-definitions] # Run only if all checks passed
	steps:
	# Checkout the code
	- name: Checkout code
	uses: actions/checkout@v2

	# Setup python 3.8.10
	- name: Setup python 3.8.10
	uses: actions/setup-python@v2
	with:
	python-version: 3.8.10

	# Install requirements, pysmurf, and sphinx
	- name: Install dependencies
	run: \|
	python -m pip install -r requirements.txt
	python -m pip install .
	python -m pip install sphinx

	# Try to build the documentation
	- name: Build documentation
	run: \|
	cd docs
	make html

	# Server tests
	test-server:
	name: Server Tests
	runs-on: ubuntu-20.04
	needs: [flake8, docker-definitions] # Run only if all checks passed
	steps:
	# Checkout the code
	- name: Checkout code
	uses: actions/checkout@v2

	# Setup Docker build environment
	- name: Set up docker build enviroment
	uses: docker/setup-buildx-action@v1

	# Extract the branch name.
	# - For PR, the branch name is "github.head_ref"
	# - For non-pull-request builds, the BRANCH_NAME env var will be empty.
	# Extract it from GITHUB_REF in the format of refs/heads/<branch-name>
	- name: Get branch name
	id: branch_name
	env:
	BRANCH_NAME: ${{ github.head_ref }}
	run: \|
	echo ::set-output name=branch::"${BRANCH_NAME:-$(echo $GITHUB_REF \| awk 'BEGIN { FS = "/" } ; { $1=$2=""; sub(" ",""); gsub(" ","/"); print }')}"

	# Build docker image
	- name: Build docker image
	run: \|
	mkdir docker/server/local_files
	docker image build \
	--file ./docker/server/Dockerfile \
	--build-arg branch=${{ steps.branch_name.outputs.branch }} \
	--tag server_docker \
	./docker/server

	# Start the docker container
	- name: Start docker container
	run: \|
	docker container run -dti --rm --name server \
	--entrypoint bash \
	server_docker

	# Run tests in the server docker container:
	# - Try to import the smurf module in the server container
	- name: Test importing the smurf module
	run: \|
	docker container exec server \
	/bin/bash -c "python3 -c 'import rogue; import smurf;'"

	# - Try to instantiate the pysmurf's SmurfProcessor module in the server container
	- name: Test instantiating the SmurfProcessor module
	run: \|
	docker container exec server \
	/bin/bash -c "python3 -c 'import pysmurf.core.devices; \
	s = pysmurf.core.devices.SmurfProcessor(name=\"\", description=\"\")'"

	# - Run the 'validate_filter.py' test script
	- name: Validate the SmurfProcessor filter
	run: \|
	docker container exec server \
	/bin/bash -c "/usr/local/src/pysmurf/tests/core/validate_filter.py"

	# - Run the 'validate_unwrapper.py' test script
	- name: Validate the SmurfProcessor unwrapper
	run: \|
	docker container exec server \
	/bin/bash -c "/usr/local/src/pysmurf/tests/core/validate_unwrapper.py"

	# - Run the 'validate_base_tx.py' test script
	- name: Validate the SmurfProcessor base transmitter
	run: \|
	docker container exec server \
	/bin/bash -c "/usr/local/src/pysmurf/tests/core/validate_base_tx.py"

	# Client tests
	test-client:
	name: Client Tests
	runs-on: ubuntu-20.04
	needs: [flake8, docker-definitions] # Run only if all checks passed
	steps:
	# Checkout the code
	- name: Checkout code
	uses: actions/checkout@v2

	# Setup Docker build environment
	- name: Set up docker build enviroment
	uses: docker/setup-buildx-action@v1

	# Extract the branch name.
	# - For PR, the branch name is "github.head_ref"
	# - For non-pull-request builds, the BRANCH_NAME env var will be empty.
	# Extract it from GITHUB_REF in the format of refs/heads/<branch-name>
	- name: Get branch name
	id: branch_name
	env:
	BRANCH_NAME: ${{ github.head_ref }}
	run: \|
	echo ::set-output name=branch::"${BRANCH_NAME:-$(echo $GITHUB_REF \| awk 'BEGIN { FS = "/" } ; { $1=$2=""; sub(" ",""); gsub(" ","/"); print }')}"

	# Build docker image
	- name: Build docker Image
	run: \|
	docker image build \
	--file ./docker/client/Dockerfile \
	--build-arg branch=${{ steps.branch_name.outputs.branch }} \
	--tag client_docker \
	./docker/client

	# Start the docker container
	- name: Start docker container
	run: \|
	docker container run -dti --rm --name client \
	--entrypoint bash \
	client_docker

	# Test docker image
	# - Try to import the pysmurf.client module in the client container
	# Note: we need to disable the matplotlib graphics backend in order
	# to be able to run in the runner.
	- name: Test docker container
	run: \|
	docker container exec client \
	/bin/bash -c "python3 -c 'import matplotlib; matplotlib.use(\"Agg\"); import pysmurf.client'"


	# Deploy

	# Deploy new release notes to GitHub
	deploy-release-notes:
	name: Generate Release Notes
	runs-on: ubuntu-20.04
	needs: [test-docs, test-server, test-client] # Run only if all tests passed
	if: startsWith(github.ref, 'refs/tags/') # Run only on tagged releases
	steps:
	# Checkout the code
	- name: Checkout code
	uses: actions/checkout@v2
	with:
	fetch-depth: 0

	# Get the git tag from the environmental variables
	# It will used to tag the docker image
	- name: Get release tag
	id: get_tag
	run: echo ::set-output name=tag::"${GITHUB_REF#refs/tags/}"

	# Setup python3
	- name: Setup python 3.8.10
	uses: actions/setup-python@v2
	with:
	python-version: 3.8.10

	# Install dependencies of the releaseGen.py script
	- name: Install dependencies
	run: \|
	python -m pip install \
	GitPython \
	PyGithub

	# Generate a release using the releaseGen.py script
	- name: Generate release notes
	env:
	REPO_SLUG: ${{ github.repository }}
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	TAG: ${{ steps.get_tag.outputs.tag }}
	run: python releaseGen.py

	# Server docker
	deploy-server:
	name: Build Server Docker Image
	runs-on: ubuntu-20.04
	needs: [test-docs, test-server, test-client] # Run only if all tests passed
	if: startsWith(github.ref, 'refs/tags/') # Run only on tagged releases
	steps:
	# Checkout the code.
	# We use ssh key authentication to be able to access other private
	# repositories (like the firmware repository).
	- name: Checkout code
	uses: actions/checkout@v2
	with:
	ssh-key: ${{ secrets.SLACLAB_KEY }}

	# Setup docker build environment
	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v1

	# Login to Dockerhub
	- name: Login to Dockerhub
	uses: docker/login-action@v1
	with:
	username: tidair
	password: ${{ secrets.DOCKERHUB_TOKEN }}

	# Build and push the docker image
	# Note about tokens: In this stage we need to use the SLACLAB TOKEN
	# to be able to access the other private repositories (GITHUB_TOKEN
	# only gives access to this repository).
	- name: Build and push image to Dockerhub
	id: build
	shell: bash
	env:
	SWH76_TOKEN: ${{ secrets.SWH76_TOKEN }}
	run: \|
	cd docker/server/
	./build.sh
	cd -

	# Client docker
	deploy-client:
	name: Build Client Docker Image
	runs-on: ubuntu-20.04
	needs: [test-docs, test-server, test-client] # Run only if all tests passed
	if: startsWith(github.ref, 'refs/tags/') # Run only on tagged releases
	steps:
	# Checkout the code
	- name: Checkout code
	uses: actions/checkout@v2

	# Get the git tag from the environmental variables
	# It will used to tag the docker image
	- name: Get release tag
	id: get_tag
	run: echo ::set-output name=tag::"${GITHUB_REF#refs/tags/}"

	# Setup Docker build environment
	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v1

	# Login to Dockerhub
	- name: Login to Dockerhub
	uses: docker/login-action@v1
	with:
	username: tidair
	password: ${{ secrets.DOCKERHUB_TOKEN }}

	# Build and push the docker image
	- name: Build and push image to Dockerhub
	uses: docker/build-push-action@v2
	with:
	context: ./docker/client
	file: ./docker/client/Dockerfile
	push: true
	tags: tidair/pysmurf-client:${{ steps.get_tag.outputs.tag }}
	build-args: branch=${{ steps.get_tag.outputs.tag }}

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fix(client.command.cryo_card): Catch EPICS timeout on read and retry. #626

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fix(client.command.cryo_card): Catch EPICS timeout on read and retry. #626

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