peparing for 2.0.0

Makefile.am

@@ -22,7 +22,7 @@ SUBDIRS := src/smithlab_cpp
 install installdirs: SUBDIRS := $(filter-out src/smithlab_cpp, $(SUBDIRS))
 AM_CPPFLAGS = -I $(top_srcdir)/src/smithlab_cpp
 
-CXXFLAGS = -O3 -funroll-loops  # default has optimization on
+CXXFLAGS = -O3  # default has optimization on
 AM_CXXFLAGS = $(OPENMP_CXXFLAGS)
 
 LDADD = src/smithlab_cpp/libsmithlab_cpp.a

configure.ac

@@ -14,7 +14,7 @@ dnl but WITHOUT ANY WARRANTY; without even the implied warranty of
 dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 dnl General Public License for more details.
 
-AC_INIT([abismal], [1.0.0], [[email protected]],
+AC_INIT([abismal], [2.0.0], [[email protected]],
         [abismal], [https://github.com/smithlabcode/abismal])
 
 dnl the config.h is not currently #included in the source, and only

src/abismal.cpp

@@ -1721,7 +1721,7 @@ run_paired_ended(const bool VERBOSE,
 int main(int argc, const char **argv) {
 
   try {
-    static const string ABISMAL_VERSION = "1.0.0";
+    static const string ABISMAL_VERSION = "2.0.0";
     bool VERBOSE = false;
     bool GA_conversion = false;
     bool allow_ambig = false;