preparing to make a 0.1.2 release, also adding some new dependencies …

…on Makefile.am

Makefile.am

@@ -30,12 +30,17 @@ bin_PROGRAMS = abismal abismalidx simreads
 
 abismal_SOURCES = \
 	src/abismal.cpp \
-	src/AbismalIndex.cpp
+	src/AbismalIndex.cpp \
+	src/AbismalAlign.hpp \
+	src/AbismalIndex.hpp \
+	src/dna_four_bit_bisulfite.hpp
 
 abismalidx_SOURCES = \
 	src/abismalidx.cpp \
-	src/AbismalIndex.cpp
+	src/AbismalIndex.cpp \
+	src/AbismalIndex.hpp
 
 simreads_SOURCES = \
 	src/simreads.cpp \
-	src/AbismalIndex.cpp
+	src/AbismalIndex.cpp \
+	src/AbismalIndex.hpp

configure.ac

@@ -14,7 +14,7 @@ dnl but WITHOUT ANY WARRANTY; without even the implied warranty of
 dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 dnl General Public License for more details.
 
-AC_INIT([abismal], [0.1], [[email protected]],
+AC_INIT([abismal], [0.1.2], [[email protected]],
         [abismal], [https://github.com/smithlabcode/abismal])
 dnl the config.h is not currently #included in the source, and only
 dnl used to keep command lines short.

src/abismal.cpp

@@ -1523,7 +1523,7 @@ select_max_candidates(const bool sensitive_mode,
 int main(int argc, const char **argv) {
 
   try {
-    static const string ABISMAL_VERSION = "0.1";
+    static const string ABISMAL_VERSION = "0.1.2";
     string index_file;
     string outfile;
     string stats_outfile = "";