Updating submodules

smithlabcode · Oct 20, 2024 · d4c8455 · d4c8455
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commit d4c8455
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/bamxx b/src/bamxx
diff --git a/src/smithlab_cpp b/src/smithlab_cpp
+5 −0		.clang-format
+20 −0		.github/workflows/source-format-check.yml
+114 −151		GenomicRegion.cpp
+141 −150		GenomicRegion.hpp
+0 −54		Makefile
+33 −11		Makefile.am
+7 −7		MappedRead.cpp
+2 −4		MappedRead.hpp
+163 −166		OptionParser.cpp
+36 −41		OptionParser.hpp
+9 −10		QualityScore.cpp
+49 −87		QualityScore.hpp
+37 −0		autogen.sh
+3 −4		bisulfite_utils.cpp
+13 −19		bisulfite_utils.hpp
+61 −68		chromosome_utils.cpp
+29 −44		chromosome_utils.hpp
+6 −8		cigar_utils.cpp
+49 −89		cigar_utils.hpp
+1 −0		configure.ac
+2 −0		dna_four_bit.cpp
+22 −32		dna_four_bit.hpp
+7 −13		htslib_wrapper.cpp
+3 −3		htslib_wrapper.hpp
+26 −43		sam_record.cpp
+58 −84		sam_record.hpp
+90 −120		smithlab_os.cpp
+52 −79		smithlab_os.hpp
+49 −47		smithlab_utils.cpp
+247 −209		smithlab_utils.hpp
+5 −10		zlib_wrapper.cpp
+18 −23		zlib_wrapper.hpp