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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    HTML 2.4k 564

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 218 186

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 155 29

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    56 12

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    HTML 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 23 23

Repositories

Showing 10 of 52 repositories
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 218 186 26 27 Updated Feb 3, 2025
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    HTML 32 MIT 10 4 0 Updated Feb 3, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    HTML 2,368 MIT 564 1,072 91 Updated Feb 3, 2025
  • snakemake-executor-plugin-slurm-jobstep Public

    A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)

    snakemake/snakemake-executor-plugin-slurm-jobstep’s past year of commit activity
    Python 0 MIT 2 1 2 Updated Feb 3, 2025
  • snakemake-interface-storage-plugins Public

    This package provides a stable interface for interactions between Snakemake and its storage plugins.

    snakemake/snakemake-interface-storage-plugins’s past year of commit activity
    Python 1 MIT 6 4 3 Updated Feb 3, 2025
  • snakemake-executor-plugin-aws-batch Public

    A Snakemake executor plugin for AWS Batch

    snakemake/snakemake-executor-plugin-aws-batch’s past year of commit activity
    Python 5 MIT 4 2 2 Updated Feb 3, 2025
  • snakemake-storage-plugin-s3 Public

    A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)

    snakemake/snakemake-storage-plugin-s3’s past year of commit activity
    Python 2 MIT 11 3 4 Updated Jan 31, 2025
  • snakemake-interface-logger-plugins Public
    snakemake/snakemake-interface-logger-plugins’s past year of commit activity
    Python 0 0 0 1 Updated Jan 30, 2025
  • snakemake-hpc-teaching-material Public
    snakemake/snakemake-hpc-teaching-material’s past year of commit activity
    TeX 7 CC-BY-SA-4.0 2 13 2 Updated Jan 30, 2025
  • snakemake-interface-software-deployment-plugins Public

    A stable interface for Snakemake software deployment plugins

    snakemake/snakemake-interface-software-deployment-plugins’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 29, 2025
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