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@sourmash-bio

sourmash, for large-scale biological sequence search!

Quickly search, compare, and analyze genomic and metagenomic data sets.

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  1. sourmash sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python 485 80

  2. branchwater branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    Rust 10 3

  3. wort wort Public

    A database for signatures of public genomic sources

    Python 18 2

  4. sourmash_plugin_branchwater sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    Python 21 4

  5. database-examples database-examples Public

    Example workflows and useful scripts for building your own sourmash databases

    Python 2

  6. sourmash-mixers sourmash-mixers Public

    A meta-package to install a number of sourmash plugins!

    4

Repositories

Showing 10 of 40 repositories
  • sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    sourmash-bio/sourmash’s past year of commit activity
    Python 485 80 697 (4 issues need help) 62 Updated Feb 4, 2025
  • sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    sourmash-bio/sourmash_plugin_branchwater’s past year of commit activity
    Python 21 AGPL-3.0 4 97 19 Updated Feb 3, 2025
  • wort Public

    A database for signatures of public genomic sources

    sourmash-bio/wort’s past year of commit activity
    Python 18 2 22 2 Updated Feb 3, 2025
  • sourmash-bio/sourmash_plugin_directsketch’s past year of commit activity
    Rust 3 BSD-3-Clause 1 22 3 Updated Feb 3, 2025
  • branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    sourmash-bio/branchwater’s past year of commit activity
    Rust 10 3 22 3 Updated Feb 3, 2025
  • 2025-sourmash-databases-doc-template Public

    Template structure for building new sourmash database doc files

    sourmash-bio/2025-sourmash-databases-doc-template’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Feb 1, 2025
  • 2025-sourmash-ncbi-viral-databases Public

    Build infrastructure for creating sourmash databases from NCBI for all viruses

    sourmash-bio/2025-sourmash-ncbi-viral-databases’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 25, 2025
  • 2025-sourmash-eukaryotic-databases Public

    Build infrastructure for creating sourmash databases from NCBI for all eukaryotes

    sourmash-bio/2025-sourmash-eukaryotic-databases’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 22, 2025
  • sourmash_plugin_template Public template

    template for building sourmash plugins

    sourmash-bio/sourmash_plugin_template’s past year of commit activity
    Python 2 BSD-3-Clause 0 1 0 Updated Jan 19, 2025
  • sourmash-bio/2024-ictv-challenge-sourmash’s past year of commit activity
    Python 0 0 0 0 Updated Dec 31, 2024