batch_single_subject.sh: t2_seg.nii.gz -> t2_rootlets.nii.gz

Co-authored-by: Jan Valosek <[email protected]>
spinalcordtoolbox · Nov 28, 2024 · 9ade09f · 9ade09f
1 parent abbc08d
commit 9ade09f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/single_subject/batch_single_subject.sh b/single_subject/batch_single_subject.sh
@@ -438,7 +438,7 @@ cd ../t2
 # Segment the spinal nerve rootlets
 sct_deepseg -i t2.nii.gz -task seg_spinal_rootlets_t2w -qc ~/qc_singleSubj
 # Check results using FSLeyes
-fsleyes t2.nii.gz -cm greyscale t2_seg.nii.gz -cm subcortical -a 70.0 &
+fsleyes t2.nii.gz -cm greyscale t2_rootlets.nii.gz -cm subcortical -a 70.0 &
 
 # Canal segmentation
 sct_deepseg -i t2.nii.gz -task canal_t2w -qc ~/qc_singleSubj