process_data.sh: Preserve -p sct_deepseg_sc

`sct_deepseg` QC is not yet available in `sct_qc` script
spinalcordtoolbox · Nov 29, 2024 · ce7466d · ce7466d
1 parent a6d684c
commit ce7466d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/multi_subject/process_data.sh b/multi_subject/process_data.sh
@@ -80,7 +80,7 @@ segment_if_does_not_exist() {
   if [[ -e "${FILESEGMANUAL}" ]]; then
     echo "Found! Using manual segmentation."
     rsync -avzh "${FILESEGMANUAL}" "${FILESEG}".nii.gz
-    sct_qc -i "${file}".nii.gz -s "${FILESEG}".nii.gz -p sct_deepseg -qc "${PATH_QC}" -qc-subject "${SUBJECT}"
+    sct_qc -i "${file}".nii.gz -s "${FILESEG}".nii.gz -p sct_deepseg_sc -qc "${PATH_QC}" -qc-subject "${SUBJECT}"
   else
     echo "Not found. Proceeding with automatic segmentation."
     # Segment spinal cord