SCT-Course-20241209

Update `batch_single_subject.sh` and `process_data.sh` to match chang…

r20241007

Add data and commands for `rootlets-segmentation` tutorial  (#22)

* tutorial-datasets.csv: Update with rootlets data

* batch_single_subject.sh: Update with rootlets segmentation

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Co-authored-by: valosekj <[email protected]>

r20240919

This release adds the necessary data and commands for the Lesion Analysis tutorial, added in PR spinalcordtoolbox/spinalcordtoolbox#4586 by @valosekj.

r20231129

`tutorial-datasets.csv`: Remove t1.nii.gz from seg zip

SCT-Course-20231020

Add sample `qc_fail.yml` file.

r20231011

Add lumbar data and steps from future lumbar registration tutorial (#17)

r20230828

Add data and commands for `sct_compute_compression` tutorial (#16)

* Add new file: `t2_compressed.nii.gz`

* `batch_single_subject.sh`: Update with compression metric steps

* tutorial-datasets.csv: Update with compression data

r20220728

Note

• To run through the SCT course as a whole, please use the "Source code" downloads.
• To complete each tutorial section individually, use the .zip files corresponding to each section.

What's Changed

• Update dataset to support contrast agnostic registration tutorial by @joshuacwnewton in #11

Full Changelog: r20220125...r20220728

r20220125

Note

• To run through the SCT course as a whole, please use the "Source code" downloads.
• To complete each tutorial section individually, use the .zip files corresponding to each section.

What's Changed

• batch_single_subject.sh: Replace sct_maths with sct_dmri_separate_dwi_and_b0 by @joshuacwnewton in #8

Full Changelog: SCT-Course-20211116...r20220125

SCT-Course-20211116

Note

• To run through the SCT course as a whole, please use the "Source code" downloads.
• To complete each tutorial section individually, use the .zip files corresponding to each section.

The dataset has been updated to be compatible for use with the most recent changes to the SCT Course (2021-11-16).

What's Changed

• Modify batch_single_subject.sh to include feedback from Nov 4 meeting by @joshuacwnewton in #4
• Added script for manual correction by @jcohenadad in #6

Full Changelog: SCT-Course-20211116-rc...SCT-Course-20211116