regen javadocs #513
Workflow file for this run
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name: Compile, Test, and Deploy | |
on: | |
pull_request: {} | |
push: | |
branches: | |
- main | |
release: | |
types: [published] | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
jobs: | |
lint-java: | |
runs-on: 'ubuntu-latest' | |
continue-on-error: true | |
name: Lint Java | |
defaults: | |
run: | |
working-directory: java | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up JDK 11 | |
uses: actions/setup-java@v3 | |
with: | |
java-version: '11' | |
distribution: 'corretto' | |
- name: Check Formatting | |
run: mvn --batch-mode com.spotify.fmt:fmt-maven-plugin:check | |
lint-cpp: | |
runs-on: 'ubuntu-latest' | |
continue-on-error: true | |
name: Lint C++ | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Check C++ Formatting | |
uses: jidicula/[email protected] | |
with: | |
clang-format-version: 16 | |
run-cpp-tests: | |
runs-on: ${{ matrix.os }} | |
continue-on-error: true | |
defaults: | |
run: | |
working-directory: cpp | |
strategy: | |
matrix: | |
os: | |
- 'ubuntu-latest' | |
- windows-latest | |
- macos-latest | |
name: Test C++ on ${{ matrix.os }} | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
submodules: recursive | |
- name: Install CMake (Windows) | |
if: matrix.os == 'windows-latest' | |
run: cmake --version | |
- name: Install CMake (MacOS) | |
if: matrix.os == 'macos-latest' | |
run: brew install cmake | |
- name: Install CMake (Ubuntu) | |
if: matrix.os == 'ubuntu-latest' | |
run: sudo apt-get install -y cmake | |
- name: Run tests | |
run: make test | |
run-java-tests: | |
continue-on-error: true | |
name: Test with Java ${{ matrix.java-version }} on ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
working-directory: java | |
strategy: | |
matrix: | |
os: ['ubuntu-latest', windows-latest, macos-latest] | |
java-version: ['11', '17'] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up JDK ${{ matrix.java-version }} | |
uses: actions/setup-java@v3 | |
with: | |
java-version: ${{ matrix.java-version }} | |
distribution: 'corretto' | |
gpg-private-key: ${{ secrets.SONATYPE_GPG_PRIVATE_KEY }} | |
gpg-passphrase: MAVEN_GPG_PASSPHRASE | |
- uses: ilammy/msvc-dev-cmd@v1 | |
if: runner.os == 'Windows' | |
- name: Compile | |
run: make | |
- name: Run Tests | |
run: mvn --batch-mode test | |
run-java-tests-with-address-sanitizer: | |
if: false # Disabled due to ASan log spam in output | |
continue-on-error: true | |
name: Test with Java ${{ matrix.java-version }} + Address Sanitizer | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
working-directory: java | |
strategy: | |
matrix: | |
java-version: ['11', '17'] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up JDK ${{ matrix.java-version }} | |
uses: actions/setup-java@v4 | |
with: | |
java-version: ${{ matrix.java-version }} | |
distribution: 'corretto' | |
gpg-private-key: ${{ secrets.SONATYPE_GPG_PRIVATE_KEY }} | |
gpg-passphrase: MAVEN_GPG_PASSPHRASE | |
- name: Compile | |
env: | |
USE_ASAN: "1" | |
run: make target/classes/linux-x64/libvoyager.so | |
- name: Run Tests | |
run: | | |
ASAN_OPTIONS=detect_leaks=0 | |
LD_PRELOAD=$(clang -print-file-name=libclang_rt.asan-x86_64.so) \ | |
mvn --batch-mode test | |
run-python-tests: | |
runs-on: ${{ matrix.os }} | |
continue-on-error: true | |
defaults: | |
run: | |
working-directory: python | |
strategy: | |
matrix: | |
python-version: | |
# - '3.7' | |
- '3.8' | |
# - '3.9' | |
# - '3.10' | |
# - '3.11' | |
os: ['ubuntu-latest', windows-latest, macos-latest] | |
name: Test with Python ${{ matrix.python-version }} on ${{ matrix.os }} | |
steps: | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- uses: actions/checkout@v3 | |
with: | |
submodules: recursive | |
- name: Install Linux dependencies | |
if: runner.os == 'Linux' | |
run: sudo apt-get update && sudo apt-get install -y pkg-config | |
- name: Install test dependencies | |
env: | |
# on macOS and with Python 3.10: building NumPy from source fails without these options: | |
NPY_BLAS_ORDER: "" | |
NPY_LAPACK_ORDER: "" | |
run: | | |
python -m pip install --upgrade pip | |
pip install wheel | |
pip install -r dev-requirements.txt | |
- name: Build voyager locally | |
run: python setup.py develop | |
- name: Run tox tests | |
run: tox | |
run-python-tests-with-address-sanitizer: | |
defaults: | |
run: | |
working-directory: python | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: | |
# - '3.7' | |
- '3.8' | |
# - '3.9' | |
# - '3.10' | |
# - '3.11' | |
os: ['ubuntu-latest'] | |
name: Test with Python ${{ matrix.python-version }} + Address Sanitizer | |
steps: | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- uses: actions/checkout@v3 | |
with: | |
submodules: recursive | |
- name: Install Linux dependencies | |
if: runner.os == 'Linux' | |
run: sudo apt-get update && sudo apt-get install -y pkg-config | |
- name: Install test dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install wheel | |
pip install -r dev-requirements.txt | |
- name: Build voyager locally | |
env: | |
DEBUG: "0" | |
USE_ASAN: "1" | |
CC: clang | |
CXX: clang++ | |
run: python setup.py develop | |
- name: Run tox tests with ASan loaded | |
# pytest can exit before all Python objects have been destroyed, | |
# so we tell ASan to ignore leaks. | |
run: | | |
ASAN_OPTIONS=detect_leaks=0 \ | |
LD_PRELOAD=$(clang -print-file-name=libclang_rt.asan-x86_64.so) \ | |
tox | |
run-benchmarks: | |
strategy: | |
matrix: | |
os: ['ubuntu-latest'] | |
runs-on: ${{ matrix.os }} | |
continue-on-error: true | |
if: github.event_name == 'pull_request' | |
name: Run benchmarks on ${{ matrix.os }} | |
steps: | |
- name: Set up Python | |
uses: actions/setup-python@v3 | |
with: | |
python-version: '3.9' | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
submodules: recursive | |
- name: Install Linux dependencies | |
if: runner.os == 'Linux' | |
run: sudo apt-get update && sudo apt-get install -y pkg-config | |
- name: Install dev dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install wheel | |
pip install -r python/dev-requirements.txt | |
- name: Run benchmarks | |
run: | | |
asv machine --yes | |
asv continuous --sort name --no-only-changed refs/remotes/origin/main ${{ github.sha }} | tee >(sed '1,/All benchmarks:/d' > $GITHUB_STEP_SUMMARY) | |
build-python-wheels: | |
needs: [run-python-tests, run-python-tests-with-address-sanitizer] | |
runs-on: ${{ matrix.os }} | |
continue-on-error: true | |
if: true # (github.event_name == 'release' && github.event.action == 'published') || contains(github.event.pull_request.labels.*.name, 'Also Test Wheels') | |
strategy: | |
matrix: | |
include: | |
- { os: macos-latest, build: cp37-macosx_x86_64 } | |
- { os: macos-latest, build: cp38-macosx_x86_64 } | |
- { os: macos-latest, build: cp39-macosx_x86_64 } | |
- { os: macos-latest, build: cp310-macosx_x86_64 } | |
- { os: macos-latest, build: cp311-macosx_x86_64 } | |
- { os: macos-latest, build: cp312-macosx_x86_64 } | |
- { os: macos-latest, build: cp38-macosx_universal2 } | |
- { os: macos-latest, build: cp39-macosx_universal2 } | |
- { os: macos-latest, build: cp310-macosx_universal2 } | |
- { os: macos-latest, build: cp311-macosx_universal2 } | |
- { os: macos-latest, build: cp312-macosx_universal2 } | |
- { os: macos-latest, build: cp38-macosx_arm64 } | |
- { os: macos-latest, build: cp39-macosx_arm64 } | |
- { os: macos-latest, build: cp310-macosx_arm64 } | |
- { os: macos-latest, build: cp311-macosx_arm64 } | |
- { os: macos-latest, build: cp312-macosx_arm64 } | |
# - { os: macos-latest, build: pp37-macosx_x86_64 } | |
# - { os: macos-latest, build: pp38-macosx_x86_64 } | |
# - { os: macos-latest, build: pp39-macosx_x86_64 } | |
- { os: windows-latest, build: cp37-win_amd64 } | |
- { os: windows-latest, build: cp38-win_amd64 } | |
- { os: windows-latest, build: cp39-win_amd64 } | |
- { os: windows-latest, build: cp310-win_amd64 } | |
- { os: windows-latest, build: cp311-win_amd64 } | |
- { os: windows-latest, build: cp312-win_amd64 } | |
# - { os: windows-latest, build: pp37-win_amd64 } | |
# - { os: windows-latest, build: pp38-win_amd64 } | |
# - { os: windows-latest, build: pp39-win_amd64 } | |
- { os: 'ubuntu-latest', build: cp37-manylinux_x86_64 } | |
- { os: 'ubuntu-latest', build: cp37-manylinux_aarch64 } | |
- { os: 'ubuntu-latest', build: cp38-manylinux_x86_64 } | |
- { os: 'ubuntu-latest', build: cp38-manylinux_aarch64 } | |
- { os: 'ubuntu-latest', build: cp39-manylinux_x86_64 } | |
- { os: 'ubuntu-latest', build: cp39-manylinux_aarch64 } | |
- { os: 'ubuntu-latest', build: cp310-manylinux_x86_64 } | |
- { os: 'ubuntu-latest', build: cp310-manylinux_aarch64 } | |
- { os: 'ubuntu-latest', build: cp311-manylinux_x86_64 } | |
- { os: 'ubuntu-latest', build: cp311-manylinux_aarch64 } | |
- { os: 'ubuntu-latest', build: cp312-manylinux_x86_64 } | |
- { os: 'ubuntu-latest', build: cp312-manylinux_aarch64 } | |
# - { os: 'ubuntu-latest', build: pp37-manylinux_x86_64 } | |
# - { os: 'ubuntu-latest', build: pp37-manylinux_aarch64 } | |
# - { os: 'ubuntu-latest', build: pp38-manylinux_x86_64 } | |
# - { os: 'ubuntu-latest', build: pp38-manylinux_aarch64 } | |
# - { os: 'ubuntu-latest', build: pp39-manylinux_x86_64 } | |
# - { os: 'ubuntu-latest', build: pp39-manylinux_aarch64 } | |
name: Build wheel for ${{ matrix.build }} | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
submodules: recursive | |
# Used to host cibuildwheel, so version doesn't really matter | |
- uses: actions/setup-python@v3 | |
with: | |
python-version: "3.10" | |
- name: Install cibuildwheel | |
run: python -m pip install 'cibuildwheel>=2.11.0' | |
- name: Copy README into place | |
run: cp README.md python/ | |
- name: Set up QEMU for aarch64 on Linux | |
if: runner.os == 'Linux' | |
uses: docker/setup-qemu-action@v1 | |
with: | |
platforms: all | |
- name: Build wheels | |
run: cp -r cpp python/cpp && cd python && python -m cibuildwheel --output-dir ../wheelhouse | |
env: | |
CIBW_TEST_REQUIRES: -r dev-requirements.txt | |
CIBW_TEST_COMMAND: "pytest {project}/tests -x" | |
CIBW_BUILD: ${{ matrix.build }} | |
CIBW_ARCHS: auto64 # Only support building 64-bit wheels. It's 2022! | |
CIBW_ARCHS_LINUX: auto64 aarch64 # Useful for building linux images with Apple Silicon | |
CIBW_ARCHS_MACOS: x86_64 universal2 arm64 # Support Apple Silicon | |
CIBW_ARCHS_WINDOWS: AMD64 | |
# on macOS and with Python 3.10: building NumPy from source fails without these options: | |
CIBW_ENVIRONMENT: NPY_BLAS_ORDER="" NPY_LAPACK_ORDER="" | |
CIBW_REPAIR_WHEEL_COMMAND_LINUX: pip install auditwheel-symbols && (auditwheel repair -w {dest_dir} {wheel} || auditwheel-symbols --manylinux 2010 {wheel}) | |
# Use the minimum macOS deployment target that has C++17 support: | |
CIBW_TEST_SKIP: "*aarch64" | |
MACOSX_DEPLOYMENT_TARGET: "10.13" | |
- uses: actions/upload-artifact@v3 | |
with: | |
if-no-files-found: error | |
name: python-wheels | |
path: ./wheelhouse/*.whl | |
build-java-jars: | |
continue-on-error: false | |
name: Build JAR with on ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
working-directory: java | |
strategy: | |
matrix: | |
os: ['ubuntu-latest', windows-latest, macos-latest] | |
java-version: ['11'] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up JDK ${{ matrix.java-version }} | |
uses: actions/setup-java@v3 | |
with: | |
java-version: ${{ matrix.java-version }} | |
distribution: 'corretto' | |
gpg-private-key: ${{ secrets.SONATYPE_GPG_PRIVATE_KEY }} | |
gpg-passphrase: MAVEN_GPG_PASSPHRASE | |
- name: Set up QEMU for aarch64 on Linux | |
if: runner.os == 'Linux' | |
uses: docker/setup-qemu-action@v1 | |
with: | |
platforms: all | |
- uses: ilammy/msvc-dev-cmd@v1 | |
if: runner.os == 'Windows' | |
- name: Compile | |
run: make | |
- name: Package | |
run: mvn --batch-mode package | |
env: | |
MAVEN_GPG_PASSPHRASE: ${{ secrets.SONATYPE_PASSPHRASE }} | |
- uses: actions/upload-artifact@v3 | |
with: | |
if-no-files-found: error | |
name: java-${{ matrix.os }} | |
path: java/target/voyager-*.jar | |
combine-java-jars: | |
name: Combine JARs | |
runs-on: ubuntu-latest | |
needs: build-java-jars | |
steps: | |
- uses: actions/download-artifact@v3 | |
with: | |
path: artifacts | |
- name: Unpack and Repack JARs | |
shell: bash | |
working-directory: artifacts | |
run: | | |
rm -fv java-*/*-sources.jar | |
rm -fv java-*/*-javadoc.jar | |
for artifact in java-*; do unzip -o $artifact/*.jar -d combined-jar; done | |
# Quick test that the JARs were built for the correct architectures | |
echo "Checking linux-x64/libvoyager.so for x86 architecture..." | |
file combined-jar/linux-x64/libvoyager.so | grep x86 | |
echo "Checking mac-x64/libvoyager.dylib for x86 architecture..." | |
file combined-jar/mac-x64/libvoyager.dylib | grep x86 | |
echo "Checking linux-aarch64/libvoyager.so for aarch64 architecture..." | |
file combined-jar/linux-aarch64/libvoyager.so | grep aarch64 | |
echo "Checking mac-aarch64/libvoyager.dylib for arm64 architecture..." | |
file combined-jar/mac-aarch64/libvoyager.dylib | grep arm64 | |
echo "Checking the Linux JARs to ensure a sufficiently old required GLIBC and GLIBCXX version in each..." | |
echo "Checking linux-aarch64/libvoyager.so (should require at most GLIBC 2.27...)" | |
objdump -T combined-jar/linux-aarch64/libvoyager.so | grep GLIBC | grep -v GLIBCXX | sed 's/.*GLIBC_\([.0-9]*\).*/\1/g' | cat - <(echo 2\.27) | sort -Vu | tail -n 1 | grep 2\.27 || (echo "Expected linux-aarch64 binary to require at most glibc 2.27. Ensure the dockcross container has not been updated." && false) | |
echo "Checking linux-aarch64/libvoyager.so (should require at most GLIBCXX 3.4.22...)" | |
objdump -T combined-jar/linux-aarch64/libvoyager.so | grep GLIBCXX | sed 's/.*GLIBCXX_\([.0-9]*\).*/\1/g' | cat - <(echo 3\.4\.22) | sort -Vu | tail -n 1 | grep 3\.4\.22 || (echo "Expected linux-aarch64 binary to require at most glibc++ 3.4.22. Ensure the dockcross container has not been updated." && false) | |
echo "Checking linux-x64/libvoyager.so (should require at most GLIBC 2.27...)" | |
objdump -T combined-jar/linux-x64/libvoyager.so | grep GLIBC | grep -v GLIBCXX | sed 's/.*GLIBC_\([.0-9]*\).*/\1/g' | cat - <(echo 2\.27) | sort -Vu | tail -n 1 | grep 2\.27 || (echo "Expected linux-x64 binary to require at most glibc 2.28. Ensure the dockcross container has not been updated." && false) | |
echo "Checking linux-x64/libvoyager.so (should require at most GLIBCXX 3.4.22...)" | |
objdump -T combined-jar/linux-x64/libvoyager.so | grep GLIBCXX | sed 's/.*GLIBCXX_\([.0-9]*\).*/\1/g' | cat - <(echo 3\.4\.22) | sort -Vu | tail -n 1 | grep 3\.4\.22 || (echo "Expected linux-x64 binary to require at most glibc++ 3.4.22. Ensure the dockcross container has not been updated." && false) | |
zip -r $(ls java-* | grep jar | tail -n 1) combined-jar/* | |
- uses: actions/upload-artifact@v3 | |
with: | |
if-no-files-found: error | |
name: java-all-platforms | |
path: artifacts/*.jar | |
upload-pypi: | |
defaults: | |
run: | |
working-directory: python | |
needs: [build-python-wheels, run-python-tests-with-address-sanitizer, run-python-tests] | |
runs-on: 'ubuntu-latest' | |
name: "Upload wheels to PyPI" | |
if: github.event_name == 'release' && github.event.action == 'published' | |
steps: | |
- uses: actions/download-artifact@v3 | |
with: | |
name: python-wheels | |
path: dist | |
- uses: pypa/[email protected] | |
with: | |
user: __token__ | |
password: ${{ secrets.PYPI_DEPLOY_TOKEN }} | |
upload-maven: | |
name: Upload to Maven Central | |
runs-on: ubuntu-latest | |
needs: combine-java-jars | |
if: github.event_name == 'release' && github.event.action == 'published' | |
defaults: | |
run: | |
working-directory: java | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/download-artifact@v3 | |
with: | |
name: java-all-platforms | |
path: combined-jar | |
- name: Set up JDK 11 | |
uses: actions/setup-java@v3 | |
with: | |
java-version: 11 | |
distribution: 'corretto' | |
server-id: ossrh | |
server-username: MAVEN_USERNAME | |
server-password: MAVEN_USER_TOKEN | |
gpg-private-key: ${{ secrets.SONATYPE_GPG_PRIVATE_KEY }} | |
gpg-passphrase: MAVEN_GPG_PASSPHRASE | |
- name: Deploy | |
# Note: this will re-run the build even though we already have the JAR file ready to deploy | |
run: | | |
# Copy the native artifacts built for each platform into the appropriate place: | |
unzip ../combined-jar/*.jar -d ../ | |
mkdir -p target/classes/ | |
cp -r ../combined-jar/linux* target/classes/ | |
cp -r ../combined-jar/mac* target/classes/ | |
cp -r ../combined-jar/win* target/classes/ | |
mvn --batch-mode deploy -Dmaven.test.skip=true | |
env: | |
MAVEN_USERNAME: ${{ secrets.SONATYPE_USERNAME }} | |
MAVEN_PASSWORD: ${{ secrets.SONATYPE_PASSWORD }} | |
MAVEN_GPG_PASSPHRASE: ${{ secrets.SONATYPE_PASSPHRASE }} | |
MAVEN_USER_TOKEN: ${{ secrets.SONATYPE_USER_TOKEN }} |