Code used to trace the rise of sequences and structures in a SELEX experiment. Also used to trace the mutational evolution occuring during a SELEX experiment.
Python 2.7
Numpy 1.6
Cogent 1.5.3 (With modified/added files included here)
Qiime 1.5
uclust 2.2
infernal 1.1r2
ViennaRNA package (RNAForester)
BayesFold
RNAShapes