Fixed snakemake io files

ssi-dk · Nov 14, 2024 · ef46743 · ef46743
1 parent e208cbe
commit ef46743
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bifrost_chewbbaca/pipeline.smk b/bifrost_chewbbaca/pipeline.smk
@@ -129,7 +129,7 @@ rule blast_gene_call:
         chewbbaca_blastdb = f"{os.environ['BIFROST_CG_MLST_DIR']}/blastdb/",
     output:
         gene_call_results = directory(f"{component['name']}/blast_gene_call_results"),
-        gene_calls = gene_call_results+f"/{sample_name}.fa"
+        gene_calls = f"{component['name']}/blast_gene_call_results/{sample_name}.fa",
         gene_call_done = f"{component['name']}/blast_gene_call_done"
     script:
         os.path.join(os.path.dirname(workflow.snakefile), "rule__blast_genecall.py")