activate conda in docker

ssi-dk · Nov 13, 2024 · 0a3908b · 0a3908b
1 parent 5e513b5
commit 0a3908b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/bifrost_sp_ecoli_workflow.yml b/.github/workflows/bifrost_sp_ecoli_workflow.yml
@@ -87,4 +87,4 @@ jobs:
           --env BIFROST_DB_KEY=${{ secrets.MONGODB_ATLAS_CONNECTION }} \
           --env CONDA_ENV_NAME="${{ env.ENV_NAME }}" \
           bifrost_sp_ecoli_image \
-          bash -c "conda activate $CONDA_ENV_NAME && conda list"
+          bash -c "source /opt/conda/etc/profile.d/conda.sh && conda activate $CONDA_ENV_NAME && conda list"