Skip to content

Commit

Permalink
Merge pull request #324 from stan-dev/hotfix/v2.0.1
Browse files Browse the repository at this point in the history
Hotfix/v2.0.1
  • Loading branch information
syclik committed Oct 24, 2013
2 parents e67c42e + 1fb9d1d commit 3c47799
Show file tree
Hide file tree
Showing 52 changed files with 2,751 additions and 1,481 deletions.
13 changes: 13 additions & 0 deletions RELEASE-NOTES.txt
Original file line number Diff line number Diff line change
@@ -1,6 +1,19 @@
STAN RELEASE NOTES
======================================================================



v2.0.1 (24 October 2013)
======================================================================

Bug Fixes
----------------------------------
* fixed multi_normal distribution's gradient calculations
* fixed diagnose mode from the command line to work for matrices
* typos in the manual



v2.0.0 (16 October 2013)
======================================================================

Expand Down
4 changes: 4 additions & 0 deletions doc/api/html/dir_3bf5ecbbc2acdb8067d845784c2d4c37.html
Original file line number Diff line number Diff line change
Expand Up @@ -104,6 +104,10 @@
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:multi__normal_8hpp"><td class="memItemLeft" align="right" valign="top">file &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="multi__normal_8hpp.html">multi_normal.hpp</a> <a href="multi__normal_8hpp_source.html">[code]</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:multi__normal__cholesky_8hpp"><td class="memItemLeft" align="right" valign="top">file &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="multi__normal__cholesky_8hpp.html">multi_normal_cholesky.hpp</a> <a href="multi__normal__cholesky_8hpp_source.html">[code]</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:multi__normal__prec_8hpp"><td class="memItemLeft" align="right" valign="top">file &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="multi__normal__prec_8hpp.html">multi_normal_prec.hpp</a> <a href="multi__normal__prec_8hpp_source.html">[code]</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:multi__student__t_8hpp"><td class="memItemLeft" align="right" valign="top">file &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="multi__student__t_8hpp.html">multi_student_t.hpp</a> <a href="multi__student__t_8hpp_source.html">[code]</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:wishart_8hpp"><td class="memItemLeft" align="right" valign="top">file &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="wishart_8hpp.html">wishart.hpp</a> <a href="wishart_8hpp_source.html">[code]</a></td></tr>
Expand Down
6 changes: 4 additions & 2 deletions doc/api/html/files.html
Original file line number Diff line number Diff line change
Expand Up @@ -750,8 +750,10 @@
<tr id="row_0_0_10_0_0_0_5_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><a href="matrix__normal_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="matrix__normal_8hpp.html" target="_self">matrix_normal.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_0_6_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><a href="multi__gp_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="multi__gp_8hpp.html" target="_self">multi_gp.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_0_7_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><a href="multi__normal_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="multi__normal_8hpp.html" target="_self">multi_normal.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_0_8_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><a href="multi__student__t_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="multi__student__t_8hpp.html" target="_self">multi_student_t.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_0_9_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><a href="wishart_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="wishart_8hpp.html" target="_self">wishart.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_0_8_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><a href="multi__normal__cholesky_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="multi__normal__cholesky_8hpp.html" target="_self">multi_normal_cholesky.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_0_9_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><a href="multi__normal__prec_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="multi__normal__prec_8hpp.html" target="_self">multi_normal_prec.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_0_10_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><a href="multi__student__t_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="multi__student__t_8hpp.html" target="_self">multi_student_t.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_0_11_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2lastnode.png" alt="\" width="16" height="22" /><a href="wishart_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="wishart_8hpp.html" target="_self">wishart.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_1_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img id="arr_0_0_10_0_0_1_" src="ftv2pnode.png" alt="o" width="16" height="22" onclick="toggleFolder('0_0_10_0_0_1_')"/><img id="img_0_0_10_0_0_1_" src="ftv2folderclosed.png" alt="+" width="24" height="22" onclick="toggleFolder('0_0_10_0_0_1_')"/><a class="el" href="dir_ae30097f91ecf0dffad078cd8b901d6c.html" target="_self">discrete</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_1_0_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><a href="categorical_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="categorical_8hpp.html" target="_self">categorical.hpp</a></td><td class="desc"></td></tr>
<tr id="row_0_0_10_0_0_1_1_" style="display:none;"><td class="entry"><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2blank.png" alt="&#160;" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2vertline.png" alt="|" width="16" height="22" /><img src="ftv2node.png" alt="o" width="16" height="22" /><a href="categorical__logit_8hpp_source.html"><img src="ftv2doc.png" alt="*" width="24" height="22" /></a><a class="el" href="categorical__logit_8hpp.html" target="_self">categorical_logit.hpp</a></td><td class="desc"></td></tr>
Expand Down
2 changes: 1 addition & 1 deletion doc/api/html/generator_8hpp_source.html
Original file line number Diff line number Diff line change
Expand Up @@ -1517,7 +1517,7 @@
<div class="line"><a name="l01425"></a><span class="lineno"><a class="code" href="structstan_1_1gm_1_1statement__visgen.html#a8b4d0dbca715399dad65ca12d81c2caf"> 1425</a></span>&#160; <span class="keywordtype">void</span> <a class="code" href="structstan_1_1gm_1_1statement__visgen.html#a8b4d0dbca715399dad65ca12d81c2caf">operator()</a>(<a class="code" href="structstan_1_1gm_1_1sample.html">sample</a> <span class="keyword">const</span>&amp; x)<span class="keyword"> const </span>{</div>
<div class="line"><a name="l01426"></a><span class="lineno"> 1426</span>&#160; <span class="keywordflow">if</span> (!<a class="code" href="structstan_1_1gm_1_1statement__visgen.html#a021d7d6fb6d86d0d05f91fead1b7beaf">include_sampling_</a>) <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l01427"></a><span class="lineno"> 1427</span>&#160; <a class="code" href="namespacestan_1_1gm.html#a5dfdee531df2c1a3fa39c3c5d9ee5edd">generate_indent</a>(<a class="code" href="structstan_1_1gm_1_1statement__visgen.html#ae4c1610db98461ae144b353bcee4ef0c">indent_</a>,<a class="code" href="structstan_1_1gm_1_1visgen.html#a05817588766bc44447698a3602e82cdb">o_</a>);</div>
<div class="line"><a name="l01428"></a><span class="lineno"> 1428</span>&#160; <a class="code" href="structstan_1_1gm_1_1visgen.html#a05817588766bc44447698a3602e82cdb">o_</a> &lt;&lt; <span class="stringliteral">&quot;lp_accum__.add(&quot;</span> &lt;&lt; x.<a class="code" href="structstan_1_1gm_1_1sample.html#a516dbdf8e9b0deee39b6ff63c8d5cde1">dist_</a>.<a class="code" href="structstan_1_1gm_1_1distribution.html#ab09553687b34895debe5818c548f26b8">family_</a> &lt;&lt; <span class="stringliteral">&quot;_log&lt;true&gt;(&quot;</span>;</div>
<div class="line"><a name="l01428"></a><span class="lineno"> 1428</span>&#160; <a class="code" href="structstan_1_1gm_1_1visgen.html#a05817588766bc44447698a3602e82cdb">o_</a> &lt;&lt; <span class="stringliteral">&quot;lp_accum__.add(&quot;</span> &lt;&lt; x.<a class="code" href="structstan_1_1gm_1_1sample.html#a516dbdf8e9b0deee39b6ff63c8d5cde1">dist_</a>.<a class="code" href="structstan_1_1gm_1_1distribution.html#ab09553687b34895debe5818c548f26b8">family_</a> &lt;&lt; <span class="stringliteral">&quot;_log&lt;propto__&gt;(&quot;</span>;</div>
<div class="line"><a name="l01429"></a><span class="lineno"> 1429</span>&#160; <a class="code" href="namespacestan_1_1gm.html#a6d7cbee2be927cee628328a4e879294a">generate_expression</a>(x.<a class="code" href="structstan_1_1gm_1_1sample.html#a29225bfbf5c3cc9b6f259782ac957891">expr_</a>,<a class="code" href="structstan_1_1gm_1_1visgen.html#a05817588766bc44447698a3602e82cdb">o_</a>);</div>
<div class="line"><a name="l01430"></a><span class="lineno"> 1430</span>&#160; <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i &lt; x.<a class="code" href="structstan_1_1gm_1_1sample.html#a516dbdf8e9b0deee39b6ff63c8d5cde1">dist_</a>.<a class="code" href="structstan_1_1gm_1_1distribution.html#aab595ee25d571021f9c27db31b187f6b">args_</a>.size(); ++i) {</div>
<div class="line"><a name="l01431"></a><span class="lineno"> 1431</span>&#160; <a class="code" href="structstan_1_1gm_1_1visgen.html#a05817588766bc44447698a3602e82cdb">o_</a> &lt;&lt; <span class="stringliteral">&quot;, &quot;</span>;</div>
Expand Down
Loading

0 comments on commit 3c47799

Please sign in to comment.