Update pkgdown files

.Rbuildignore

@@ -2,3 +2,7 @@
 ^renv\.lock$
 ^.*\.Rproj$
 ^\.Rproj\.user$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$
+^\.github$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/pkgdown.yaml

@@ -0,0 +1,50 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown.yaml
+
+permissions: read-all
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -5,3 +5,4 @@
 NetCoMi.Rproj
 .Renviron
 .Rprofile
+docs

DESCRIPTION

@@ -2,8 +2,14 @@ Package: NetCoMi
 Type: Package
 Title: Network Construction and Comparison for Microbiome Data
 Version: 1.1.0
-Author: Stefanie Peschel [aut, cre]
-Maintainer: Stefanie Peschel <[email protected]>
+Authors@R: c(
+    person("Stefanie", "Peschel", email = "[email protected]", 
+    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7936-7627")),
+    person("Christian", "Müller", "L.", role = "ctb", comment = c(ORCID = "0000-0002-3821-7083")),
+    person("Anne-Laure", "Boulesteix", role = "ctb", comment = c(ORCID = "0000-0002-2729-0947")),
+    person("Erika", "von Mutius", role = "ctb", comment = c(ORCID = "0000-0002-8893-4515")),
+    person("Martin", "Depner", role = "ctb")
+  )
 Description: NetCoMi offers functions for constructing, analyzing, and comparing 
     microbial association networks as well as dissimilarity-based networks for 
     microbial compositional data. It also includes functionality for 
@@ -57,4 +63,5 @@ Suggests:
     zCompositions
 RdMacros: Rdpack
 Encoding: UTF-8
-RoxygenNote: 7.2.2
+RoxygenNote: 7.3.2
+URL: https://stefpeschel.github.io/NetCoMi/

R/NetCoMi-package.R

@@ -15,7 +15,4 @@
 #'    (inspiration and theoretical background)
 #'    \item Anastasiia Holovchak (package testing and editing)
 #'   }
-#'
-#' @name NetCoMi-package
-#' @docType package
-NULL
+"_PACKAGE"

_pkgdown.yml

@@ -0,0 +1,4 @@
+url: https://stefpeschel.github.io/NetCoMi/
+template:
+  bootstrap: 5
+