docs: update pkgdown.yaml

stefpeschel · Nov 7, 2024 · 9fac801 · 9fac801
1 parent 84af7ca
commit 9fac801
Showing 1 changed file with 6 additions and 5 deletions.
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -34,16 +34,17 @@ jobs:
         with:
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::pkgdown, any::BiocManager, local::.
-          needs: website
-
+      # Install Bioconductor dependencies
       - name: Install Bioconductor dependencies
         run: |
           Rscript -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")'
           Rscript -e 'BiocManager::install(c("metagenomeSeq", "Biobase", "phyloseq"))'
 
+      # Continue with remaining dependencies
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+
       - name: Build site
         run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
         shell: Rscript {0}