make changes to see if the alias reaction test passes on windows

sys-bio · Feb 7, 2025 · ff292da · ff292da
1 parent f2944e0
commit ff292da
Showing 1 changed file with 17 additions and 19 deletions.
diff --git a/src/features/alias_elements/libsbmlnetwork_alias_reaction.cpp b/src/features/alias_elements/libsbmlnetwork_alias_reaction.cpp
@@ -43,26 +43,24 @@ namespace LIBSBMLNETWORK_CPP_NAMESPACE {
         for (unsigned int i = 0; i < referenceReactionGlyph->getNumSpeciesReferenceGlyphs(); i++) {
             SpeciesReferenceGlyph *speciesReferenceGlyph = referenceReactionGlyph->getSpeciesReferenceGlyph(i);
             SpeciesGlyph *speciesGlyph = layout->getSpeciesGlyph(speciesReferenceGlyph->getSpeciesGlyphId());
-            if (speciesGlyph) {
-                SpeciesGlyph *connectedSpeciesGlyph = NULL;
-                if (speciesGlyphAliasSpeciesGlyphIds.find(speciesGlyph->getId()) == speciesGlyphAliasSpeciesGlyphIds.end())
-                    connectedSpeciesGlyph = alias_element_createAliasSpeciesGlyph(layout, speciesGlyph, padding);
-                else
-                    connectedSpeciesGlyph = layout->getSpeciesGlyph(
-                            speciesGlyphAliasSpeciesGlyphIds[speciesGlyph->getId()]);
-                if (connectedSpeciesGlyph != NULL) {
-                    speciesGlyphAliasSpeciesGlyphIds[speciesGlyph->getId()] = connectedSpeciesGlyph->getId();
-                    std::cout << "SpeciesGlyphAliasSpeciesGlyphIds: " << speciesGlyphAliasSpeciesGlyphIds[speciesGlyph->getId()] << std::endl;
-                    int stoichiometry = getStoichiometryAsInteger(layout,
-                            findSpeciesReference(document->getModel(), layout, referenceReactionGlyph, speciesGlyph));
-                    for (unsigned int stoichiometryIndex = 0; stoichiometryIndex < stoichiometry; stoichiometryIndex++)
-                        alias_element_createAliasSpeciesReferenceGlyph(reactionGlyph, speciesReferenceGlyph,
-                                                                       connectedSpeciesGlyph->getId(),
-                                                                       stoichiometryIndex, padding);
-                }
-            }
-            else
+            if (!speciesGlyph)
                 return -1;
+
+            SpeciesGlyph *connectedSpeciesGlyph = NULL;
+            if (speciesGlyphAliasSpeciesGlyphIds.find(speciesGlyph->getId()) == speciesGlyphAliasSpeciesGlyphIds.end())
+                connectedSpeciesGlyph = alias_element_createAliasSpeciesGlyph(layout, speciesGlyph, padding);
+            else
+                connectedSpeciesGlyph = layout->getSpeciesGlyph(
+                        speciesGlyphAliasSpeciesGlyphIds[speciesGlyph->getId()]);
+            if (connectedSpeciesGlyph != NULL) {
+                speciesGlyphAliasSpeciesGlyphIds[speciesGlyph->getId()] = connectedSpeciesGlyph->getId();
+                int stoichiometry = getStoichiometryAsInteger(layout,
+                                                              findSpeciesReference(document->getModel(), layout, referenceReactionGlyph, speciesGlyph));
+                for (unsigned int stoichiometryIndex = 0; stoichiometryIndex < stoichiometry; stoichiometryIndex++)
+                    alias_element_createAliasSpeciesReferenceGlyph(reactionGlyph, speciesReferenceGlyph,
+                                                                   connectedSpeciesGlyph->getId(),
+                                                                   stoichiometryIndex, padding);
+            }
         }
 
         return 0;