Skip to content

Issues: tanghaibao/goatools

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

45 Open 169 Closed
45 Open 169 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Where to store obo file
#307 opened Nov 1, 2024 by Tim-Kirkwood
1
No TAXID for Ecoli and incompatibility of the Ecoli specific annotation file
#306 opened Oct 30, 2024 by FH96
Extra 'label' node at top of DAG of GO terms
#305 opened Oct 8, 2024 by avigailtaylor
I couldn't get "regulates" ancestors terms bug
#304 opened Sep 16, 2024 by 10myl200
@tanghaibao
7
Keeping terms not in DAG
#291 opened Apr 27, 2024 by Prunoideae
2
Text in GO term box - plotting
#286 opened Feb 6, 2024 by LeilaFattel
Error in making result file
#274 opened Jun 24, 2023 by Rhia15
3
Issues with find.enrichment.py when I use the same IDs for study.txt and population.txt
#273 opened Jun 22, 2023 by pomorale
1
Optimising go term tests
#272 opened Jun 15, 2023 by francicco
What's the point of removing genes with identical identifiers?
#271 opened Jun 2, 2023 by shelkmike
Information content of a custom GO annotation.
#270 opened May 2, 2023 by ohdongha
1
Best practices for background gene sets
#267 opened Mar 28, 2023 by stanleyjs
3
Conditional tests? enhancement
#264 opened Feb 24, 2023 by sjfleming
Idea: Flag to compute enrichment for user-specified GO terms enhancement
#263 opened Feb 21, 2023 by DylanSteinecke
Keep on receiving **FATAL: NO POPULATION ITEMS SEEN IN THE ANNOTATIONS in my current work
#260 opened Feb 7, 2023 by HelloWorldLTY
Different results when restricting background set to only include genes with at least one annotation term
#259 opened Jan 27, 2023 by Maryam-Haghani
1
How to get most recent common ancesters and shortest path distance between two terms?
#256 opened Dec 19, 2022 by jasperhyp
Error: no population items seen in the annotations when using GAF file
#254 opened Dec 6, 2022 by jlastoll
1
Output columns of grouped_gos
#250 opened Nov 7, 2022 by cestaroa
Some questions about gene selection
#249 opened Oct 15, 2022 by HelloWorldLTY
AttributeError: 'GOEnrichmentStudy' object has no attribute 'print_results'
#248 opened Aug 3, 2022 by Liyong-Zhang
Error message while running goatools
#247 opened Jul 27, 2022 by akaur1988
Does gene ontology enrichment analysis work with Ensembl gene ids?
#244 opened Jul 11, 2022 by BerkKilicoglu
Discrepancies between using GoSearch and direct search on geneontology.org
#243 opened Jul 11, 2022 by jasperhyp
1
Unhelpful Documentation, Missing High Level Interface
#241 opened Jun 15, 2022 by fratajcz
5
ProTip! Exclude everything labeled bug with -label:bug.