Installation

Install Bioconda or miniforge on your system if not already present, then install detectEVE using these shell commands:

# download workflow
git clone https://github.com/thackl/detectEVE
cd detectEVE

# install dependencies via conda or mamba
mamba create -n detectEVE
mamba activate detectEVE
mamba env update --file workflow/envs/env.yaml

# check if detectEVE works
./detectEVE -h

# download and prep databases
./detectEVE --setup-databases [--snake ARGS]

For more information on database setup, see database setup