update vignette

thelovelab · Jan 17, 2025 · 04d48aa · 04d48aa
1 parent 5a06002
commit 04d48aa
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 1 deletion.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: tximeta
-Version: 1.25.1
+Version: 1.25.2
 Title: Transcript Quantification Import with Automatic Metadata
 Description: Transcript quantification import from Salmon and
     other quantifiers with automatic attachment of transcript ranges

diff --git a/vignettes/tximeta.Rmd b/vignettes/tximeta.Rmd
@@ -314,6 +314,11 @@ transcript and exons, the gene ranges are cached locally for repeated
 usage. The transcript IDs are stored as a *CharacterList* column
 `tx_ids`.
 
+**Note:** you can also use `summarizeToGene` on an object created with
+`skipMeta=TRUE` which therefore does not have ranges or an associated *TxDb* by
+setting `skipRanges=TRUE` and providing your own `tx2gene` table which is passed
+to `tximport`.
+
 ```{r}
 gse <- summarizeToGene(se)
 rowRanges(gse)