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tillrobin committed Nov 13, 2019
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Expand Up @@ -14,6 +14,8 @@ See [www.dsmz.de/pibac](https://www.dsmz.de/pibac) and our paper for details:
**In-depth cultivation of the pig gut microbiome towards novel bacterial diversity and tailored functional studies**
David Wylensek and Thomas C. A. Hitch et al. , corresponding author: Thomas Clavel

Note: This site is under construction.

### External studies providing data:

Xiao, Liang, et al. "A reference gene catalogue of the pig gut microbiome." Nature microbiology 1.12 (2016): 16161. https://doi.org/10.1038/nmicrobiol.2016.161
Expand All @@ -34,9 +36,13 @@ Xiao, Liang, et al. "A reference gene catalogue of the pig gut microbiome." Natu
Accession codes of the used gut metagenome sequences:
European Nucleotide Archive: [PRJEB11755](http://www.ebi.ac.uk/ena/data/view/PRJEB11755)

## Pipelines:
## Phylogenetic Tree:

Tree was constucted from GTDB-Tk maker genes, including GTDB-Tk taxonomy information and ANI scores to the GTDB reference genomes.

![pipeline](/images/pipeline.png)
![tree](/images/pibac_tree_mag_isolates_v2.png)

## Pipelines:

We recommend the use of [Bioconda](http://bioconda.github.io/)

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