reproduction-number

A GitHub repo for the generation of a network model to represent society with various components, the spread of the disease on this network, and the calculation of reproduction number on these simulation results.

social-network network disease-spread lockdown sir-model disease-prediction coronavirus covid-19 social-distancing reproduction-number

Updated Jun 24, 2020
Python

CMU-SAFARI / COVIDHunter

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COVIDHunter 🦠:construction:: An accurate and flexible COVID-19 outbreak simulation model that forecasts the strength of future mitigation measures and the numbers of cases, hospitalizations, and deaths for a given day, while considering the potential effect of environmental conditions. Described by Alser et al. (preliminary version at https://ar…

simulation epidemiology covid-19 covid-19-data covid-19-tracker reproduction-number covidhunter oxford-stringency-index switzerland-case-study

Updated Dec 22, 2021
Swift

epiforecasts / covid19.sgene.utla.rt

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Local area reproduction numbers and S-gene target failure.

open-science covid-19 reproduction-number

Updated Dec 11, 2021
R

mishra-lab / covid-r

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Estimating the effective reproduction number Re(t) for COVID19 in GTA, Canada

toronto assumptions covid-19 reproduction-number

Updated Jun 23, 2021
R

epiforecasts / covid.german.forecasts

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Comparing crowd sourced and model derived forecasts of Covid-19 for Germany and Poland

germany forecast poland covid-19 reproduction-number epinow2 epiexpert

Updated May 15, 2024
TeX

CovItaly / ReproductionNumber

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Estimates of COVID-19 R_t in Real-Time.

python jupyter-notebook open-access open-science epidemiology covid-19 covid-19-italy covid19-data reproduction-number computational-epidemiology

Updated May 7, 2020
Jupyter Notebook

epiforecasts / rt-comparison-uk-public

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Evaluating the use of the reproduction number as an epidemiological tool, using spatio-temporal trends of the Covid-19 outbreak in England.

open-source united-kingdom covid-19 reproduction-number epinow2 rt-comparison-uk

Updated May 12, 2021
R

mshfd / reproduction-number

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Compute the effective reproduction number for an epidemic based on positive test ratio or absolute number of cases.

covid-19 covid covid19 sars-cov-2 reproduction-number

Updated Dec 11, 2022
Python

epiforecasts / covid-rt-brazil-subregional

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Subregional estimates of Rt for Covid-19 in Brazil

brazil rstats covid-19 reproduction-number epinow2

Updated Nov 24, 2020
R

menon99 / Indiacovid19

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Source code of covid-india-analysis, a project to keep track of covid19 in India

Updated Jun 16, 2021
Java

maxscheijen / rt-live-netherlands

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📈 Real-time effective reproduction number for COVID-19 in the Netherlands

data-science netherlands bayesian-statistics covid-19 reproduction-number

Updated Feb 11, 2022
Python

sanguedemonstro / reproduction-number-covid19-santa-catarina

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O índice de contágio do COVID-19 regionalizado, por estados, municípios e até bairros, em tempo real, pode apoiar a tomada de decisões do poder público sobre como conter o contágio e como conduzir a retomada da atividade econômica de forma segura.

python data-science jupyter-notebook epidemiology volunteer covid-19 covid covid-19-brazil reproduction-number computational-epidemiology