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Framework: Expand CodeQL job to run on all non-deprecated packages modified at a time #13478

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merged 12 commits into from
Nov 6, 2024

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achauphan
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@trilinos/framework @csiefer2

Motivation

The current CodeQL test configuration will run only on Tpetra and MueLu. We want to expand CodeQL's analysis to include all non-deprecated packages that were modified in a PR (ignore downstream packages).

Doing so will increase build time, so this will need to run on our self-hosted runners being spawned by the AutoTester2.

Related Issues

Testing

Testing CodeQL changes will occur within this PR using the AutoTester2 system while the [WIP] label is being used.

@achauphan achauphan added AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) PA: Framework Issues that fall under the Trilinos Framework Product Area labels Sep 25, 2024
@achauphan achauphan self-assigned this Sep 25, 2024
@achauphan achauphan added AT2-SpecialApprove (Beta) Special approval label for AT2. and removed AT2-SpecialApprove (Beta) Special approval label for AT2. labels Sep 25, 2024
@achauphan achauphan added AT2-SpecialApprove (Beta) Special approval label for AT2. and removed AT2-SpecialApprove (Beta) Special approval label for AT2. labels Sep 26, 2024
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Looks reasonable to me! @achauphan

@achauphan achauphan added AT2-SpecialApprove (Beta) Special approval label for AT2. and removed AT2-SpecialApprove (Beta) Special approval label for AT2. labels Sep 30, 2024
cd trilinos_build

bash ${GITHUB_WORKSPACE}/packages/framework/GenConfig/LoadEnv/load-env.sh --force rhel8_gcc-openmpi_debug_shared_no-kokkos-arch_no-asan_complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables

cmake -G 'Unix Makefiles' -DTrilinos_ENABLE_TESTS=OFF -DTrilinos_ENABLE_Epetra=OFF -DTrilinos_ENABLE_AztecOO=OFF -DTrilinos_ENABLE_Ifpack=OFF -DTrilinos_ENABLE_ML=OFF -D Trilinos_ENABLE_Triutils=OFF -DTrilinos_ENABLE_Tpetra=ON -DTrilinos_ENABLE_MueLu=ON -DTrilinos_ENABLE_Krino=OFF ..
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This needs to be changed to build the correct set of packages (the ones modified as part of this PR, but not downstream ones).

Could also use the PR scripts to facilitate this, and maybe add the configure option that turns off downstream packages (something like Trilinos_ENABLE_DOWNSTREAM_PACKAGES ish)? Using GenConfig will likely fix your issues with not finding TPLs.

Squashing all the terrible commits I made while using the GitHub web
interface. The interface does not seem to have support for signing with
DCO.

Includes changes which modify the event triggers to comply with new AT2
specifications, assignment of an AT2 runner to run on, usage of
GenConfig to load the environment, and prototype implementation of
calling the get-changed-trilinos-packages.sh script.

Signed-off-by: Anderson Chauphan <[email protected]>
Fix calling of get-changed-trilinos-packages.sh to correctly reference
the origin remote.

Signed-off-by: Anderson Chauphan <[email protected]>
The GenConfig step is just used to generate a cmake fragment for the
configuration. This would fit nicely with the step that generates the
other cmake fragment for package enables.

Signed-off-by: Anderson Chauphan <[email protected]>
Tidy up workflow file with consistent naming and add newlines between
each named step for better readability.

Signed-off-by: Anderson Chauphan <[email protected]>
Add TriBITS cache variables to reduce code built for packages that are
not needed.

Signed-off-by: Anderson Chauphan <[email protected]>
Signed-off-by: Anderson Chauphan <[email protected]>
Manually disable each deprecated package in the cmake command for CodeQL
configuration. Since these are defined on the command line, they should
take priority over any of the enables from the package_enables.cmake or
the genconfig_fragment.cmake fragments.

Signed-off-by: Anderson Chauphan <[email protected]>
@achauphan achauphan changed the title [WIP] Framework: Expand CodeQL job to run on all non-deprecated packages modified at a time Framework: Expand CodeQL job to run on all non-deprecated packages modified at a time Oct 29, 2024
Add default shell setting to CodeQL job specifying to use a `bash -l`
login shell to clean the syntax throughout the file where these were
being individually specified.

Signed-off-by: Anderson Chauphan <[email protected]>
Signed-off-by: Anderson Chauphan <[email protected]>
Add workflow concurrency cancelation check for previous workflows
associated with the same PR.

Signed-off-by: Anderson Chauphan <[email protected]>
@achauphan achauphan removed the AT: WIP Causes the PR autotester to not test the PR. (Remove to allow testing to occur.) label Nov 4, 2024
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Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

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Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: PR_gcc-openmpi-openmp

  • Build Num: 697
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-openmpi-4.1.6-openmp_release-debug_static_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_gcc

  • Build Num: 747
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_gcc-openmpi_debug

  • Build Num: 748
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-openmpi-4.1.6-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_clang

  • Build Num: 746
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-clang-11.0.1-openmpi-4.0.5-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: Trilinos_PR_python3

  • Build Num: 4705
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
BLOCKING_BUILD false
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_aue-gnu-12.1.0-anaconda3-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_pr-framework
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_cuda

  • Build Num: 745
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8-gpu
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_intel

  • Build Num: 666
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-intel-2021.3-sems-openmpi-4.1.6_release-debug_shared_no-kokkos-arch_no-asan_no-complex_fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_cuda-uvm

  • Build Num: 745
  • Status: STARTED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Using Repos:

Repo: TRILINOS (achauphan/Trilinos)
  • Branch: expand-codeql
  • SHA: f7fdee0
  • Mode: TEST_REPO

Pull Request Author: achauphan

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Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: PR_gcc-openmpi-openmp

  • Build Num: 697
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-openmpi-4.1.6-openmp_release-debug_static_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_gcc

  • Build Num: 747
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_gcc-openmpi_debug

  • Build Num: 748
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-openmpi-4.1.6-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_clang

  • Build Num: 746
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-clang-11.0.1-openmpi-4.0.5-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: Trilinos_PR_python3

  • Build Num: 4705
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
BLOCKING_BUILD false
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_aue-gnu-12.1.0-anaconda3-serial_debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_pr-framework
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_cuda

  • Build Num: 745
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8-gpu
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_intel

  • Build Num: 666
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-intel-2021.3-sems-openmpi-4.1.6_release-debug_shared_no-kokkos-arch_no-asan_no-complex_fpic_mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5

Build Information

Test Name: PR_cuda-uvm

  • Build Num: 745
  • Status: PASSED

Jenkins Parameters

Parameter Name Value
FORCE_CLEAN true
GENCONFIG_BUILD_NAME rhel8_sems-cuda-11.4.2-gnu-10.1.0-openmpi-4.1.6_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework;AT2-SpecialApprove
PULLREQUESTNUM 13478
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
TRILINOS_NODE_LABEL rhel8
TRILINOS_SOURCE_REPO https://github.com/achauphan/Trilinos
TRILINOS_SOURCE_SHA f7fdee0
TRILINOS_SRN_CONFIG true
TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 7eb5fe5


CDash Test Results for PR# 13478.

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Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
THE LAST COMMIT TO THIS PULL REQUEST HAS NOT BEEN REVIEWED YET!

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All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

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All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

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It looks like all packages were enabled, but I think that's because of the logic in the changed package enabler script. This looks good to me.

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Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ sebrowne ]!

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Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

@achauphan achauphan added the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Nov 6, 2024
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Status Flag 'Pull Request AutoTester' - Pull Request will be Automerged

@trilinos-autotester trilinos-autotester merged commit 55315cd into trilinos:develop Nov 6, 2024
16 of 17 checks passed
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Merge on Pull Request# 13478: IS A SUCCESS - Pull Request successfully merged

@trilinos-autotester trilinos-autotester removed the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Nov 6, 2024
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