Connect expanded intervals from targeted-coverage to downstream pipelines that accept intervals #373
yashpatel6Annotations
12 warnings
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CICD-base
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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CICD-base
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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CICD-base:
templates/status_check.sh#L3
This expression is constant. Did you forget the $ on a variable? [SC2050]
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CICD-base:
templates/status_check.sh#L27
Double quote to prevent globbing and word splitting. [SC2086]
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CICD-base:
test/test-calculate-targeted-coverage/assert_bed.sh#L3
Double quote to prevent globbing and word splitting. [SC2086]
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CICD-base:
test/test-calculate-targeted-coverage/assert_bed.sh#L6
Double quote to prevent globbing and word splitting. [SC2086]
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CICD-base:
test/test-calculate-targeted-coverage/assert_bed.sh#L7
Double quote to prevent globbing and word splitting. [SC2086]
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CICD-base:
test/test-call-gSNP/assert_vcf.sh#L3
Double quote to prevent globbing and word splitting. [SC2086]
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CICD-base:
test/test-call-gSNP/assert_vcf.sh#L6
Double quote to prevent globbing and word splitting. [SC2086]
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CICD-base:
test/test-call-gSNP/assert_vcf.sh#L7
Double quote to prevent globbing and word splitting. [SC2086]
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CICD-base:
test/test-call-gSV/assert_bcf.sh#L3
Double quote to prevent globbing and word splitting. [SC2086]
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CICD-base:
test/test-call-gSV/assert_bcf.sh#L15
Double quote to prevent globbing and word splitting. [SC2086]
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