Fixes #180
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Fixes #180
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… -> This way, custom bool columns are also converted to T/F strings (necessary for being AIRR compliant)
- 10xGenomics: update import functionality and docs according to most current CellRanger outputs - simplified import preprocessing for VDJdb/TenxGenomics (these cases are already handled in general data import) - remove obsolete import statements everywhere
…w up in the log file
- add "sequence label" option to repertoire VJ gene dist report - repertoire safety check: only 1 chain type allowed within a repertoire - separate results files for chains
…entifier from metadata
# Conflicts: # immuneML/util/MotifPerformancePlotHelper.py
- pandas minimal version is 2.1 - remove duplicate fisherapi
…ly set for repertoires, so "ignore_counts" must be set to True to get the same results
- receptor_id is obsolete due to adhering to the AIRR standard, now use cell_id (or regex_id)
…nction data); added extra assert to SimpleVAE for clearer error in this casw
…ry files which cannot be recreated with the same url
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Various bugfixes and documentation updates