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Update epitope-specific_TCR_AIRRs.rst
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mchernigovskaya authored Nov 6, 2024
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Expand Up @@ -218,6 +218,7 @@ Figure below shows a UMAP plot constructed from a LIgO long-seed data simulation

The UMAP was generated using RapTCR tool (Van Deuren et al., 2023). For more information on UMAP construction, please refer to the `RapTCR documentation <https://vincentvandeuren.github.io/RapTCR_docs/visualizing/UMAP.html>`_ and the Gielis et al. manuscript (`biorxiv <https://www.biorxiv.org/content/10.1101/2024.10.21.619364v1>`_).

Figure 1: UMAP plot of LIgO-simulated data using long seeds. TCRs corresponding to different immune signals are shown in different colors.
.. image:: ../_static/figures/UMAP.png
:width: 1500

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