Clean up and modularize build (NOAA-EMC#453)

clean-up and modularization of the build

.gitignore

@@ -59,10 +59,50 @@ regtests/*/*.png
 regtests/ww3_tp2.14/input/oasis3-mct/doc
 regtests/ww3_tp2.14/input*/*.nc.OAS*CM*
 regtests/ww3_tp2.14/input*/*/*.nc.OAS*CM*
+regtests/ww3_tp2.14/input/toy/*.o
+regtests/ww3_tp2.14/input/oasis3-mct/util/make_dir/cmplr
+regtests/ww3_tp2.14/input/toy/toy_model
+regtests/ww3_tp2.14/input/ww3_shel.inp
+regtests/ww3_tp2.14/input/ww3_shel.nml
+regtests/ww3_tp2.15/input_rho/ww3_prnc.inp
 regtests/ww3_tp2.17/input/inlet.msh
 regtests/ww3_tp2.21/input/mesh.msh
 regtests/ww3_tp2.21/input/obstructions_local.glo_unst.in
 regtests/ww3_tp2.21/input/obstructions_shadow.glo_unst.in
+regtests/mww3_test_09/input/GtLkHuronBlst.dat
+regtests/mww3_test_09/input/GtLkHuronCels.dat
+regtests/mww3_test_09/input/GtLkHuronISid.dat
+regtests/mww3_test_09/input/GtLkHuronJSid.dat
+regtests/mww3_test_09/input/GtLkHuronObst.dat
+regtests/mww3_test_09/input/GtLkMichiBlst.dat
+regtests/mww3_test_09/input/GtLkMichiCels.dat
+regtests/mww3_test_09/input/GtLkMichiISid.dat
+regtests/mww3_test_09/input/GtLkMichiJSid.dat
+regtests/mww3_test_09/input/GtLkMichiObst.dat
+regtests/mww3_test_09/input/GtLkSuperBlst.dat
+regtests/mww3_test_09/input/GtLkSuperCels.dat
+regtests/mww3_test_09/input/GtLkSuperISid.dat
+regtests/mww3_test_09/input/GtLkSuperJSid.dat
+regtests/mww3_test_09/input/GtLkSuperObst.dat
+regtests/ww3_ufs1.1/input/glo_15mxt.bot
+regtests/ww3_ufs1.1/input/glo_15mxt.mask
+regtests/ww3_ufs1.1/input/glo_15mxt.obs
+regtests/ww3_ufs1.2/input/aoc_9km.bot
+regtests/ww3_ufs1.2/input/aoc_9km.lat
+regtests/ww3_ufs1.2/input/aoc_9km.lon
+regtests/ww3_ufs1.2/input/aoc_9km.mask
+regtests/ww3_ufs1.2/input/aoc_9km.obs
+regtests/ww3_ufs1.2/input/glo_15mxt.bot
+regtests/ww3_ufs1.2/input/glo_15mxt.mask
+regtests/ww3_ufs1.2/input/glo_15mxt.obs
+regtests/ww3_ufs1.2/input/gnh_10m.mask
+regtests/ww3_ufs1.2/input/gnh_10m.obs
+regtests/ww3_ufs1.2/input/gsh_15m.bot
+regtests/ww3_ufs1.2/input/gsh_15m.mask	
+regtests/ww3_ufs1.2/input/gsh_15m.obs
+regtests/ww3_ufs1.2/input/gnh_10m.bot
+regtests/ww3_ufs1.2/input/gsh_15m.mask
+regtests/output
 *.nc
 */*.nc
 */*/*.nc

manual/impl/compile.tex

@@ -2,20 +2,18 @@
 \subsection{~Optional environment settings}
 \vssub
 
-Compilation of the \ws\ NetCDF enabled programs requires the environment variable
-{\code WWATCH3\_NETCDF} be set to {\code NC4} (compile with NetCDF version 4.x).  
-{\code NC3} is no longer supported. 
-If {\code WWATCH3\_NETCDF = NC4}, then the following environment variable
-is required.
+Compilation of the \ws\ NetCDF enabled programs requires NetCDF version 4.1.1 or higher.
+The following environment variable is also required:  
 \begin{clist}
 \cit {NETCDF\_CONFIG} {Path to the NetCDF-4 nc-config utility program.}
 \end{clist}
-The {\file nf-config} utility program (part of the NetCDF-4 install or 
-{\file nc-config} for old versions) is used to determine the appropriate
-compile and link flags for the {\code WWATCH3\_NETCDF = NC4} compile.
-The NetCDF-4 compile requires NetCDF version 4.1.1 or higher.  Use the command
-\command{\code nf-config --version} to check the version of the installed 
-Fortran-NetCDF library. Use \command{\code nf-config --has-nc4} to check if the
+The {\file nc-config} utility program is used to determine the appropriate
+compile and link flags for compilation.
+Use the command
+\command{\code nc-config --version} to check the version of the installed 
+Fortran-NetCDF library.  It is also required that the NetCDF-4 installation 
+be compiled with the
+NetCDF-4 API enabled.  Use \command{\code nc-config --has-nc4} to check if the
 installed NetCDF has the NetCDF-4 API enabled.
 
 \vspace{\baselineskip} 

model/.gitignore

@@ -6,7 +6,10 @@ mod_*
 obj
 obj_*
 exe
+exe_*
 tmp
+tmp_*
+work*
 nuopc*.mk
 tools/makefile
 ftn/makefile