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Bug fixes for thread in w3_new and initializing variables (NOAA-EMC#373)
* update w3_new for thread switches * adding files to .gitignore * fix formatting * initialize GA0, GAN, GD0, GDN for moving grids This appears to have been causing an issue in ww3_ts3 test cases when using OMP or MPI_OMPH that have not appeared before.
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